Information report for Achn183721
Gene Details
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Functional Annotation
- Refseq: XP_028110865.1 — SNF1-related protein kinase regulatory subunit gamma-1-like
- Swissprot: Q9CAR3 — KINGL_ARATH; SNF1-related protein kinase regulatory subunit gamma-1-like
- TrEMBL: A0A2R6RFA2 — A0A2R6RFA2_ACTCH; SNF1-related protein kinase regulatory subunit gamma-1-like
- STRING: XP_010242383.1 — (Nelumbo nucifera)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0003677 — Molecular Function — DNA binding
- GO:0042802 — Molecular Function — identical protein binding
Family Introduction
- Members of the Whirly family of proteins are found throughout the plant kingdom and are predicted to share the ability to bind to single-stranded DNA. Arabidopsis and potato Whirly orthologs act as transcription factors that regulate defense gene expression; the Arabidopsis Whirly protein AtWhy1 contributes to both basal and specific defense responses. Analysis of the crystal structure of potato StWhy1 has provided insight into the DNA-binding mechanism of this family of proteins, their mode of action and possible autoregulation. There is evidence to suggest that Whirly proteins might play roles in processes other than defense responses and could function in the chloroplast as well as in the nucleus.
Literature and News
Gene Resources
- SuperFamily: SSF54447
- Gene3D: G3DSA:2.30.31.10
- Pfam: PF08536
- InterPro: IPR009044 IPR013742
Sequences
CDS Sequence:
- >Achn183721|Actinidia_chinensis|Whirly|Achn183721
ATGCTGAACCTCTTCCTATCTTCTTCTCCTCCAGGTCTCACCATCCCAAACCCTAAACCATTCTGTGTCCTCCACTCTTTCTCCTCCCTCGACGCCATCGCAGCCATTCGTCTAAAACCAACCCCCTCTTCTCTCTCCTCAACCAAAACCCCCAGACCACAAACCCTCTCCATCAAATGCCGCCGCTCCGACTACTTCGAACAGCAAAACCAGCGGTTCGCCCCGAAATCTCCTACTCCGGTGAACGACGCAGCGGGTTCGCCGCCTAGGATTTATGTGGGCCACTCGATATACAAAGGGAAGGCGGCTCTCACGGTGGACGTTCGGCCTCCGGAATTTACGCCTTTAGAAACCGGGGCGTTTAAGATGACAAAGGAAGGTTATGTGTTGCTTCAGTTTGCTCCAGCAGCTGGTGTTCGACAATATGATTGGGGCAGGAAGCAGGTATTCTCTTTGTCGGTGACTGAAATGGGAACTATAATGAGCCTTGGACCAAGTGAATCATGCGAATTCTTTCACGATCCCTTTAAAGGAAAAAGCGAGGAAGGTAAAGTGAGAAAGGTGTTGAAAGTAGAACCCCTTCCGGATGGCACTGGCCACTTCTTTAATCTCAGTATGGCACAACCGCAAACACTGAAGGAAAGTTCAAAACTTGCAAGCTATGATACTTACTTCGAAACCATCCAGAGCAGGAAGAAATTGCCAAATTCCTTGCAAGAGTCTTTGACAGCGGCATTTGCAAGAATTCCGGTTTCATCCTTCCCAGAAGTTCCTGGAGGCAAAGTGATTGAAATTCTCGCAGACACGTCCATTGGCGACGCAGTCAAAATTCTATCTGAATCCAACATCCTGTCTGCTCCAGTGAGAAATCCTGATGCCAAAAACAGTATGGACTGGAGAGAGAGGTACTTGGGAATCATAGATTACTCGGCCATAGTGCTGTGGGTGTTGGAGAGCGCTGAAATTGCTGCCGCCGCCTTGACGGCAAGTTCGGCAACTGCTGCTGGGGTAGGTGCCGGTGCTGTTGGAGCTCTTGGAGCAGTTGCATTGGGTGCAACTGGTCCTGTTGCAGTGGTCGGGTTGACTGTGGCTGCTGTTGGTGCAGCTGTAGCCGGGGGCGTGGCTGCCGATAGAGGGATGGGAAAAGATGCTCCCACTGCGGCTGATAAGTTGGGCGAGGAATTTTACAAAGTCCTCCTTCAAGAAGAACCTTTCAAGTCAACCACAGTGAGGTCAATACTAAAATCCTACCGTTGGGCACCTTTCCTTCCGGTTGCAATGGATAGTTCTATGTTGAGTGTGTTATTGCTCCTGTCAAAGTATAAGCTTAGGAACGTACCAGTAATAGAACCAGGCCAACCGTTAGTGAAGAACTTCATTACTCAATCTGCAATAGTTCATGGGCTTGAGCAATGCAAAGGACGGGATTGGTTTGAAAGCATTTCTGCGGAATCTATTTCTGATATGGGGCTTCCTTTCATGTCTAGTAACGAGGTTGTTAGCATACAGAGCGATGAACTGATTCTTGAAGCTTTCAAGAGAATGAAAGATAATCACATTGGAGGCCTTCCAGTTGTCGAGGGTCCAAAGAGAAAGATAGTTGGGAATGTGAGCATTAGAGACATCAGATACTTACTTCTTCAACCCAAGCTTTTCTCCAGTTTTAGGCAGCTGACCGTGATGGATTTCATGAACTCTATTGCTGCAACTAGCCACGACTGTGGAAAGGTCATCACGCCAATAACATGCAAGCCCGAAGCAACACTCAGCACTGTGATCCAGAGCCTTGCTTCCAAGTCAGTTCACAGGATTTATGTTGTAGGAGTGGACGAAGAAGTTGTTGGCGTGATCACTCTTAGGGATGTTATTTCTTGCTTCATCTCTGAACCCCCTAATCACTTTGATAATTACTTCGGGTTCGCAGTGCAAGAAATGTTGAACGAGTGA
Protein Sequence:
- >Achn183721|Actinidia_chinensis|Whirly|Achn183721
MLNLFLSSSPPGLTIPNPKPFCVLHSFSSLDAIAAIRLKPTPSSLSSTKTPRPQTLSIKCRRSDYFEQQNQRFAPKSPTPVNDAAGSPPRIYVGHSIYKGKAALTVDVRPPEFTPLETGAFKMTKEGYVLLQFAPAAGVRQYDWGRKQVFSLSVTEMGTIMSLGPSESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGTGHFFNLSMAQPQTLKESSKLASYDTYFETIQSRKKLPNSLQESLTAAFARIPVSSFPEVPGGKVIEILADTSIGDAVKILSESNILSAPVRNPDAKNSMDWRERYLGIIDYSAIVLWVLESAEIAAAALTASSATAAGVGAGAVGALGAVALGATGPVAVVGLTVAAVGAAVAGGVAADRGMGKDAPTAADKLGEEFYKVLLQEEPFKSTTVRSILKSYRWAPFLPVAMDSSMLSVLLLLSKYKLRNVPVIEPGQPLVKNFITQSAIVHGLEQCKGRDWFESISAESISDMGLPFMSSNEVVSIQSDELILEAFKRMKDNHIGGLPVVEGPKRKIVGNVSIRDIRYLLLQPKLFSSFRQLTVMDFMNSIAATSHDCGKVITPITCKPEATLSTVIQSLASKSVHRIYVVGVDEEVVGVITLRDVISCFISEPPNHFDNYFGFAVQEMLNE*