Information report for Zjn_sc00004.1.g05900.1.am.mk
Gene Details
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Functional Annotation
- Refseq: NP_001344790.1 — uncharacterized LOC100279868 isoform 2
- TrEMBL: A0A1D6E4F1 — A0A1D6E4F1_MAIZE; GT-2-like 1
- STRING: GRMZM2G016649_P03 — (Zea mays)
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Sequences
CDS Sequence:
- >Zjn_sc00004.1.g05900.1.am.mk|Zoysia_japonica|Trihelix|Zjn_sc00004.1.g05900.1.am.mk
ATGTACACTGCAGGATTGTTGCAAGCGCTGTCCCTGACTCTTTCGCTTGGACAGGCTCCGTCCCACCACCACCAGGTCACCAGCGGGGCGCGGGGCGTCTTTGCTTGCTTCTTTCTTCCCTCTTCCCTTGCTTTGGACCCTTTCCAGTTGTCCACGCTCCCTCCCATCTTTTTCACCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACCATCCCACCCCATCCCTTCCCCGCCGTGCCCTCCGGCCGGCCGGTCCCTTCCCTTCCCCTACTTGTACCAGCCCTTCTTTTCCAATTTCATCCTCTCCCTCCAGTTTCCACTCATCCCCCTTCTCTCTCTCTCTCCTCGCCCACACCACACTTTCACTCGGTGCGTCCGTGGGAGGGAGAGGAGGAGGGAGCTGGGCACCGGGAGCGACCCGGCCGGCCATACAAGGTCTTGCCTTTGGTTGTGGCTGCTACCCGCACGCGGCCAGCTCGTCCAAGAACCGCCTTGTCGCCGCGGCGGGGAAGGAGAAATTGAAGTTCAACCGCGAAGAAGGAGAACTGGTGGCGGCTCCCATGCAGCACCAGCCGCAGCATCAGGGAAGCGAGTCCCCGTACGGGGCCGCGCCGCCGGACATGGGTCCGTTCTCGCCGCCGGCTGCTTCTTCCGCCATGCCGCTAAGCAGCAGGCCTCCGTCGTCGTCGCAGGAGCAGCAGCAGCTGACGCCGAGCTACGAAGAATTGACCGCCGTATCCGAGGCCGGCGCCGGCGCCGGCGCCAGCTTCCCGGATGACGAGATGCTGGGTGGCGGGAGCGGAGGCGGCGGCGGGTCGGGCACGCCCGGCGGCAACCGATGGCCTCGGGAGGAGACGCTAGCGCTCATCAGGATCCGGTCAGAGATGGACGCCACCTTCCGCGACGCCACGCTCAAGGGCCCGCTGTGGGAGGACGTCTCCAGGAAGCTCGCGGATTTGGGTTACAAGAGGAGCGCCAAGAAGTGCAAGGAGAAGTTTGAGAACGTGCACAAGTACTACAAGCGCACCAAGGAAGGCCGCGCCGGGAGGCAGGACGGCAAGAGCTACCGCTTCTTCTCCGAGCTGGAGGCGTTGCATGCCGCCGCTCCGCAGCCGCCAGCAAGCAGCGCCCCGCAGATGCACGCCTTCGCAGCGCCGGTGTCGGCGGCGCCGCCGATGAATCCACTGCCGCCACCAGCGGCTGGTGGGCCGATGCAACCGGCGCCCATATCTTCCGCGGCGCCGGCGCCCTTCGAGCTGCCCCCGCCGCAGCCCCTCAATCTGCAAGGCCTCAGCTTCTCGTCGATGTCGGACTCAGAGTCCGACGGCGAGTCAGACGACGATGACATGACGGCGGAGACGGGCGGTGGCCAGGAGCAGCTCGGCAAGCGGAAGCGCGGCGGCGGCGGCAAGAAGATGATGTCTTTCTTCGAGGGGCTCATGCAGCAGGTCGTCGAGAGGCAGGAGGAGGTGCAGCGGCGGTTCCTGGAGACCATGGAGAAGCGGGAGGCGGAGCGCACGGCGCGGGAGGAGGCGTGGCGCAGGCAGGAAGTCGCCCGCCTGAACCGCGAGCAGGACCAGCTGGCCCAGGAGCGAGCCGCCGCGGCTTCCCGGGACGCCACAATCATCGCCTTCCTACAGCGCATCGGCGGCCACTCCGTACAACCCCCTGCTGCCGTCATCGTTCCAATGTCAGCGCATATGACCGTCCAGACCCCGCCACCGCCGCCAAAGCAACCTCCTCGCCAGCAGCCGACGCAGGCGACACCGCCGCCGAAGCCAATCTCGGCCTCGCCGCTCCAGCAGCAGCCACCACAGCAGCAGTACAAGGAAACCTCCCCGCAAAACGTCAGTACGCCGCGCGGTGCACCGCCGACGCCCGGGTCCGCCGCGTCACTCGAGCTGGTGCCCACCTCGGAGCAGCACGTCGATCTGGCACTCGGAGGAGAGGGCGGTGAGGCGTCGTCGTCACGGTGGCCCAAAGCCGAAGTGCACGCGCTCATCCAGCTGCGCATGGACATGGACATGCGCTACCAGGAGACAGGTCCCAAGGGCCCTCTCTGGGAGGATATCTCGGCCGGGATGCGGCGGCTGGGATACAACCGGAGCTCGAAGCGCTGCAAGGAGAAGTGGGAGAACATCAACAAGTACTACAAGAAGGTGAAGGAGAGCAACAAGAAGCGGCCCGAGGACTCCAAGACCTGCCCCTACTTCCACCAGCTCGAGGCCATCTACCTAAAGAAACAACAGAGCGGTGGCACGGCCGCCTCCTCGGCCAATGTCGTCGCCGCCGCCACCACTCCGGCCTTCACCAGTCAACTGAACCAGAGCAGGCAAGAGATAGAGGGGAAGAACATCAATGACGACAAGAGGAACAACGGAGGATCAAGCGGCGGAGGGGCGCAGGTGCCGCCCAGCAACGGAGACCCCGCGCCACCGCTGACGGCCGCGCTCGACGTCGACAGCGGCACCAAGAAGCCAGAAGACATCGTCAGGGAGCTGACGGAGCGGCCGCCTCGGGAGGTCATGACTGACGAGACGGACAGCGACGACATGGGCGACGAGTACACTGACGACGGCGAGGAAGGCGAGGATGACGGCAAAATGCAGTACAGGATACAGTTCCAGAGCCCGAACTCAGGCGGCAACAACAGCGCACCGGCACCGGCACCGGCACCGTCAACGACGACGACACCCCCGGGGCCAGCCTCGGCTCCGACGACGACGAACACCTTCGCCGCCATGGTTCAACCGCGAACCACAAAGCGGCCGGCCGACGTCGCGGACACAGATGACGGATCGGGGAAGATGGGATCACTGGGCGTGAGCCGCGATTGGATCGGAAGCGAGGGAATCATTAGCGCGCGGAAAGTGACGCTACCTGTGGCTCATCTCGCTCGCCTCACCCCGGGGCAGCTCACGCCACACATGACGATGCGCGATTTGCTGCTGCGCGACCCGAGAGAGGGAGCGGACACGCACAGTGCCTTACAGCGAATGATCCGTCCATCGCTCAGCAACCACGAGCGCTCGCTCGCTCGGTGCCTCGGTTGCTTGCAATCCTCATCCGTCATGGTATCCGCCCCAGCCCCAACCATAATTCCGGTCGGGGGCGTGGTTAACCTCACCACCAGCTCGGGCGCAACCAATGCGTCCGTGTGCCACGCCTCGACGCCACGCGGGGAAAGTGGAGTTCAGGCCGCAGCTTGCCGCGTCCGGACGTGCTCCCAATTATCCACCCCGCGGCGTCCTTCCCCCTTCCTTTCCCCTGGCTGCGCCACCATCATCACCCCACCGACCCGAGGAATCCTGATGTCCGACTACATCCTCCTCCACGCGGATGCCTTCCGGGGCATCATCACCAACTGGGACTCCACCGCGGCCAGGGCCACCACCGGTCACAATTTGACTGTCATCGCATCCCTGCGCTGCCCCGAGTGCCCTTTTCACTCCACAATCCTCTTTGCGAACGTCCCCGGCATCGACTTCACGGACGAGCACCCACGGATCGTCCGTGCCGTGGAAGATCTCATCCTCCTTCGCGTCCCCTTCGGCGGATCGGAGGATGAAGACGAGTACTTCATCTACCGGGCCGGGGGCGAGAAAGGTTCATCACTCAGGTTGCTCCCTCGGCCCGCTCGTACAACCACCTTCTGTGACGAAGATGTTGGTCGCCTTCGCCGCGGTGAGGAGCACTACACCTTCCGCGACGAAGATGTCGGTCTCCTTCGCCGTGGTGAGGAGCACTACACCGTCGCCGCGTTGCTCCCCTTAGGCAAGTCTAATGTCTACGAACTCCACCGCTTCGACTCGGTGACCGAGAAGTGGAGCACCGATAAGGTGCCGTTGGTTGAGCCACAGTTCTCGTTCCCCTAG
Protein Sequence:
- >Zjn_sc00004.1.g05900.1.am.mk|Zoysia_japonica|Trihelix|Zjn_sc00004.1.g05900.1.am.mk
MYTAGLLQALSLTLSLGQAPSHHHQVTSGARGVFACFFLPSSLALDPFQLSTLPPIFFTISLSLSLSLSLSLSLSLYHPTPSLPRRALRPAGPFPSPTCTSPSFPISSSPSSFHSSPFSLSLLAHTTLSLGASVGGRGGGSWAPGATRPAIQGLAFGCGCYPHAASSSKNRLVAAAGKEKLKFNREEGELVAAPMQHQPQHQGSESPYGAAPPDMGPFSPPAASSAMPLSSRPPSSSQEQQQLTPSYEELTAVSEAGAGAGASFPDDEMLGGGSGGGGGSGTPGGNRWPREETLALIRIRSEMDATFRDATLKGPLWEDVSRKLADLGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKSYRFFSELEALHAAAPQPPASSAPQMHAFAAPVSAAPPMNPLPPPAAGGPMQPAPISSAAPAPFELPPPQPLNLQGLSFSSMSDSESDGESDDDDMTAETGGGQEQLGKRKRGGGGKKMMSFFEGLMQQVVERQEEVQRRFLETMEKREAERTAREEAWRRQEVARLNREQDQLAQERAAAASRDATIIAFLQRIGGHSVQPPAAVIVPMSAHMTVQTPPPPPKQPPRQQPTQATPPPKPISASPLQQQPPQQQYKETSPQNVSTPRGAPPTPGSAASLELVPTSEQHVDLALGGEGGEASSSRWPKAEVHALIQLRMDMDMRYQETGPKGPLWEDISAGMRRLGYNRSSKRCKEKWENINKYYKKVKESNKKRPEDSKTCPYFHQLEAIYLKKQQSGGTAASSANVVAAATTPAFTSQLNQSRQEIEGKNINDDKRNNGGSSGGGAQVPPSNGDPAPPLTAALDVDSGTKKPEDIVRELTERPPREVMTDETDSDDMGDEYTDDGEEGEDDGKMQYRIQFQSPNSGGNNSAPAPAPAPSTTTTPPGPASAPTTTNTFAAMVQPRTTKRPADVADTDDGSGKMGSLGVSRDWIGSEGIISARKVTLPVAHLARLTPGQLTPHMTMRDLLLRDPREGADTHSALQRMIRPSLSNHERSLARCLGCLQSSSVMVSAPAPTIIPVGGVVNLTTSSGATNASVCHASTPRGESGVQAAACRVRTCSQLSTPRRPSPFLSPGCATIITPPTRGILMSDYILLHADAFRGIITNWDSTAARATTGHNLTVIASLRCPECPFHSTILFANVPGIDFTDEHPRIVRAVEDLILLRVPFGGSEDEDEYFIYRAGGEKGSSLRLLPRPARTTTFCDEDVGRLRRGEEHYTFRDEDVGLLRRGEEHYTVAALLPLGKSNVYELHRFDSVTEKWSTDKVPLVEPQFSFP