Information report for XP_016442576.1
Gene Details
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Functional Annotation
- Refseq: XP_016442576.1 — PREDICTED: ribonuclease J-like
- Swissprot: Q84W56 — RNJ_ARATH; Ribonuclease J
- TrEMBL: A0A1S3XRK1 — A0A1S3XRK1_TOBAC; ribonuclease J-like
- STRING: XP_009595689.1 — (Nicotiana tomentosiformis)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Sequences
CDS Sequence:
- >XP_016442576.1|Nicotiana_tabacum|Trihelix|XP_016442576.1
ATGGCCGCTTTCAGCGCTATTTCACTATGTCCGTACAAACTGTGCCATCAATTAAACCCTAGCAAGCGTTACATTTCTTGCTATACTCCTTCCTCTTCTACTGTAGGTGTGCGTGGATCAAAAGGTCCTCGTAGAAGACCTGCAAAAACTGAGGGTGCTGGAAGAAGCATTGACGATTCTGTCCAACGACGGATGGAGCACTTCTATGAAGGGGCTGATGGCCCACCTTTACGTGTTCTTCCTATTGGTGGTCTGGGAGAAATTGGGATGAATTGCATGCTTGTTGGAAATTATGATCGTTATATTCTCATTGATGCTGGAATAATGTTCCCAGGCTATGAAGACCTTGGTGTCCAGAAGATTATTCCTGATACAACATTCATAAAGAAATGGAGCCACAAAATTGAAGCTGTTGTTATAACTCATGGACATGAAGACCACATTGGTGCATTGCCATGGGTAATTCCTGCTCTGGATTCTCACACACCAATTTTTGCATCATCGTTCACAATGGAGCTGATTAAGAAGCGACTGAAAGAATTTGGGATATTTGTTCCATCTAGGCTTAAGGTATTTAAAACAAGAAGGAAATTTACTGCTGGGCCATTTGAGGTAGAACCTATAACGGTTACTCATTCTATTCCAGATTGTAGTGGGATAGTTCTACGTTGTTCCGATGGTACCATCCTCCATACAGGTGACTGGAAGATAGATGAGTCACCACTTGATGGAAAGGTTTTTGACCGAGAGGGCCTTGAGGAACTGTCAAAAGAAGGGGTTACTTTGATGATGAGTGATTCGACAAATGTCCTTTCCCCTGGAAGGACACTAAGTGAAACTGTAGTTGCAGATTCGCTCCTGAGGCACATTTCGGCTGCCAAAGGAAGGATTATCACTACCCAGTTTGCATCAAATATTCATCGTCTTGGCAGTGTGAAAGCTGCAGCTGACTTGACTGGCAGAAAGCTGGTATTTGTCGGCATGTCCTTGAGGACATATCTTGACGCTGCATGGAAAGATGGAAAGGCACCAATAGATCCATCAACTCTGGTAAAGGTGGAAGATATTGATACTTATGCCCCAAAAGATTTGCTCATTGTGACAACAGGTTCTCAAGCAGAACCTCGTGCTGCATTGAATCTTGCGTCATATGGAAGTAGTCATTCACTCAAATTAAACAAAGAAGATATAGTTTTGTATTCAGCCAAGGTGATTCCTGGTAATGAGACCCGGGTGATGGAAATGTTAAACCGTATATCAGATATTGGATCAACAATAGTGATGGGAAAGAATGAGCTGCTGCATACATCCGGCCATGCTCATCGTGAAGAGCTGGAAGAAGTGCTGAAGATTGTGAAGCCACAACATTTTCTTCCAATCCATGGCGAGCTCTTATTCCTAAAAGAGCATGAATTATTGGGGAAATCAACTGGAATTCGGCACACGGCTGTTATCAAGAACGGAGAGATGCTTGGAGTCTCCCATTTGAGGAACAGAAAAGTTCTATCCAATGGTTTCATTTCCTTAGGGAAGGAGAATTTGCAGTTGATGTATAGTGATGGTGACAAAGCATTTGGTACAGCTGCTGAACTTTGTATTGATGAGAGACAGAAAATTGCTTCTGATGGTATTATAGTGGTCAGTATGGAAATATTACGTCCTCAATCCACGGATGGTGCGACAGAGAAAGCTTTGAAAGGAAAAATAAGAATCACCACACGCTGCTTGTGGCTTGACAAAGGGAAACTTCTGGATGCGCTTCATAAAGCTGCACATGCTGCACTGTCAAGCTGTCCACTGAGTTGCCCGTTGCCGCACATGGAAAGAACTGTGTCTGAAGTTCTAAGGAAAATGGTCCGGAAGTACAGTAGTAAAAGACCTGAGGTTATTGCCATTGCCTTCGAAAATCCTGCAGGAGTCATGGCTGATGAAATCAATGGAAAACTTGCTGGAAAATCACATGTTGGTTTTGGAATTTCAGCACTGAGGAATGTAATGGATGAAGATCAGAAAGGAAAACGGGCAAGTGAGGCACATGCAGAAGAAGGCCATGGCCCTGGCTATCCAATTGATGATGCAGCCGAGCAAGTGGAAGGTGATGATATGGATATTGAGAGACTTACACACGACAGAGCAACTACTTCAAGTTCAATCTCGGGGGATGGATATTTTACCACCAAGGAGGAATCAGAATCGTCCAGAGAAGAGAGCATTCAAATTGATTCTGGCTTTCCGGAATCTATGATGAAATCTTCCAAGCCTTTGAAGAGGAACAGATGGAAACATGATGAGATGAAGAAGTTGATAAAATTGCGTGGGGAACTCCACAGCAGGTTCCAAGTTGTTCGAGGACGAATGGCACTATGGGAAGAGATATCTTCAAATTTACTATCTACTGGAGTCAATCGAAGTCCTGCGCAGTGTAAATCTCTCTGGGCTTCTCTAGTTCAAAAGTATGAGGAAAGCAAGAGTGATAAGAAAAGCCAGGAAAAATGGCCTTACTTTGAGGAGATGAATGAGATCTTGTCTGATTTGGAGGCGACGGCCCAGAAATGA
Protein Sequence:
- >XP_016442576.1|Nicotiana_tabacum|Trihelix|XP_016442576.1
MAAFSAISLCPYKLCHQLNPSKRYISCYTPSSSTVGVRGSKGPRRRPAKTEGAGRSIDDSVQRRMEHFYEGADGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGIMFPGYEDLGVQKIIPDTTFIKKWSHKIEAVVITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIKKRLKEFGIFVPSRLKVFKTRRKFTAGPFEVEPITVTHSIPDCSGIVLRCSDGTILHTGDWKIDESPLDGKVFDREGLEELSKEGVTLMMSDSTNVLSPGRTLSETVVADSLLRHISAAKGRIITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDTYAPKDLLIVTTGSQAEPRAALNLASYGSSHSLKLNKEDIVLYSAKVIPGNETRVMEMLNRISDIGSTIVMGKNELLHTSGHAHREELEEVLKIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVSHLRNRKVLSNGFISLGKENLQLMYSDGDKAFGTAAELCIDERQKIASDGIIVVSMEILRPQSTDGATEKALKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPLSCPLPHMERTVSEVLRKMVRKYSSKRPEVIAIAFENPAGVMADEINGKLAGKSHVGFGISALRNVMDEDQKGKRASEAHAEEGHGPGYPIDDAAEQVEGDDMDIERLTHDRATTSSSISGDGYFTTKEESESSREESIQIDSGFPESMMKSSKPLKRNRWKHDEMKKLIKLRGELHSRFQVVRGRMALWEEISSNLLSTGVNRSPAQCKSLWASLVQKYEESKSDKKSQEKWPYFEEMNEILSDLEATAQK