Information report for WALNUT_00003216-RA
Gene Details
|
|
Functional Annotation
- Refseq: XP_018853428.1 — PREDICTED: trihelix transcription factor PTL-like
- TrEMBL: A0A2I4HB90 — A0A2I4HB90_JUGRE; trihelix transcription factor PTL-like
- STRING: POPTR_0008s02580.1 — (Populus trichocarpa)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0009909 — Biological Process — regulation of flower development
- GO:0010200 — Biological Process — response to chitin
- GO:0046621 — Biological Process — negative regulation of organ growth
- GO:0048442 — Biological Process — sepal development
- GO:0048498 — Biological Process — establishment of petal orientation
- GO:0090428 — Biological Process — perianth development
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
- GO:0042803 — Molecular Function — protein homodimerization activity
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Cajanus cajan: C.cajan_10032
- Citrus sinensis: orange1.1g010601m
- Glycine max: Glyma.19G192300.1.p, Glyma.03G191700.1.p
- Manihot esculenta: Manes.10G055600.1.p, Manes.08G021500.1.p, Manes.07G000300.1.p
- Populus trichocarpa: Potri.008G025600.1, Potri.010G235000.1
- Prunus mume: XP_008231992.2
- Prunus persica: Prupe.2G086500.1.p
- Ricinus communis: 29428.m000319
- Vitis vinifera: GSVIVT01034705001, GSVIVT01033792001
Sequences
CDS Sequence:
- >WALNUT_00003216-RA|Juglans_regia|Trihelix|WALNUT_00003216-RA
ATGGGTGACCAATATGGCCTGCCGGATTTCCGGCAGTTCATGGTCGGAAGAACTCATTTTCCGTCCATAGCACAGCCTACCGAGTCGTTCTTTCCTCAAAGGAATGCGGCAGCTCCACTCCACTACGAGCCTATTATGGTTGGAGAGGTTTTGCCTCGAGGGCTTGTTGGGTTTGGCCACGATTCCCCTAGCAGCGTCACTCCCACAACAGCAACTGCAACCAGTTCAGCTGCTGCTACGCTCTGTGGTTCAGTGCAGATGGATAGTGGATGGATGGGGTATGATATGGAAAATACTAGATGGCCGAGGCAAGAAACTCTAACCCTTCTTGAGATCAGATCTCGTCTCGATTCTAAGTTCAAAGAGACTAATCAGAAAGGACCATTGTGGGATGAAGTTTCTAGGCTAATGGCTGAGGAATATGGATACCAGAGGAGCGGGAAGAAGTGTAAAGAGAAGTTTGAAAACTTGTACAAGTACTACAAGAAAACTAAGGAACGGAAATCTGGAAGGCAAGGAGGGAAGCACTACAGATTCTTCCGGCAGCTAGAAGCAATATATGGAGAAGCAAGCAATCATGCCACAGTTTCAGATACCCATCTTGCTAGAAACAGCCTTCCTAATTATCAGATTCCACATAATGTGATTAACCAAGAAAATCAAGAAGTTGATCTTCAGACCCCAAGGCTATCTGATCAGAGCCTCAGTTTCTCTAACTCATCTGAATTCGAGACCTCGTCCTCGGAACACAGGATGAATTATCAATCAATGGAGAAGCAGATAGGGATGAATGAGATCAGGCCGGAACGTTACACAAGGAATAAGAAGAACCTGAAAGCAAAGATTGAGGATTTTGTGGACTCACAAATGAGGAAGATCATGGACACACAAGAGGTTTGGATGGATAGGTTGTTGAAGACCATTGAAGATAGAGAGCAGGAGAGAGTGTTCAGAGAGGAAGAATGGAGGAAGCAAGAGGCAGCCCGGTTTGATCAGGAAGTACATCATATCTGGACTAAAGAGAGAGAGTGGGTTGAAGCTCGAGATGCAGCATTAATGGAAGCTTTAAAGAAATATATAGGGAAAGGACTAGAAGTGTCCCAATCAGCTGAGCCAATGGCTGTAGAAACTCGAAGCCACACAGAAAACCAGGATGAAAATGGGAAGGAAATTACCTACATTAACAACAGCAGATGGACAGAATTGGAGGTTTCAAGTTTAATAGAGCTGAGAACTAGCTTGGAACTGCGGTTCCAAGATGGTGAGCATTTGGACGAAAGTCTTTGGGAAGAGATAGCTACAAAAATGGGTTCTTTAGGCTATGACAGAAGTGCAGTCGAGTACAAAGAAAAATGGCAGCATATCAGCATTTATTATAACAAGGCAATAATGGAGTGTAACAAGAAGCGCAAGGAGGATTTAGATTTGAGAACCGGCAGTTATTTTCAGCAATTTGATTACTATCTTGGACAGGAAGTTTCTAAACAAAGGCCAGAGAGCATCGGGCTTCAGCTGATGAATGAGGGTAGTCTTCCACCTTCAAGTTCCAATGATAGGGACCAGGCCGACGTCCATCGACATGGCTTTCGCCATGAAGGCGAAAACTTGTGGGAGAAATATGGTGTAAGGTACTGCAAGGGGAAGACCAGCAAGTTTAATTAG
Protein Sequence:
- >WALNUT_00003216-RA|Juglans_regia|Trihelix|WALNUT_00003216-RA
MGDQYGLPDFRQFMVGRTHFPSIAQPTESFFPQRNAAAPLHYEPIMVGEVLPRGLVGFGHDSPSSVTPTTATATSSAAATLCGSVQMDSGWMGYDMENTRWPRQETLTLLEIRSRLDSKFKETNQKGPLWDEVSRLMAEEYGYQRSGKKCKEKFENLYKYYKKTKERKSGRQGGKHYRFFRQLEAIYGEASNHATVSDTHLARNSLPNYQIPHNVINQENQEVDLQTPRLSDQSLSFSNSSEFETSSSEHRMNYQSMEKQIGMNEIRPERYTRNKKNLKAKIEDFVDSQMRKIMDTQEVWMDRLLKTIEDREQERVFREEEWRKQEAARFDQEVHHIWTKEREWVEARDAALMEALKKYIGKGLEVSQSAEPMAVETRSHTENQDENGKEITYINNSRWTELEVSSLIELRTSLELRFQDGEHLDESLWEEIATKMGSLGYDRSAVEYKEKWQHISIYYNKAIMECNKKRKEDLDLRTGSYFQQFDYYLGQEVSKQRPESIGLQLMNEGSLPPSSSNDRDQADVHRHGFRHEGENLWEKYGVRYCKGKTSKFN