Information report for TRIUR3_33328-P1
Gene Details
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Functional Annotation
- Refseq: XP_020191229.1 — trihelix transcription factor GTL1-like isoform X1
- TrEMBL: M8A4E9 — M8A4E9_TRIUA; Trihelix transcription factor GT-2
- STRING: TRIUR3_33328-P1 — (Triticum urartu)
- GO:0010192 — Biological Process — mucilage biosynthetic process
- GO:0044212 — Molecular Function — transcription regulatory region DNA binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Brachypodium distachyon: Bradi3g30457.2.p, Bradi3g30457.1.p, Bradi3g30457.3.p, Bradi3g30457.4.p
- Hordeum vulgare: MLOC_14207.3, MLOC_14207.1, MLOC_14207.2
- Panicum virgatum: Pavir.9NG788800.1.p, Pavir.9KG561300.2.p, Pavir.9KG561300.1.p
- Setaria italica: Seita.9G570100.2.p
- Triticum aestivum: Traes_1BL_A5A91DE10.1, Traes_5BL_590637F31.1, Traes_1AL_ED83D13D4.2
Sequences
CDS Sequence:
- >TRIUR3_33328-P1|Triticum_urartu|Trihelix|TRIUR3_33328-P1
ATGGCGGCGATGCTCGCAAGAGGCCAGCGGCTCTGCCAGATGGTCCATGACGCTGGCCTGCGGCATGGCACCGAGGATCGTCTCCAGACGGTGTTGGCGACCGGTTGGTGGATGGTCGCCGTCGACGCCAGCTACGACACTCAGTATGACCAGATGATAGTTTCCAGCACCAACAAGTTCACCGTCGCCAAGAAGCTCGCGGACGACATCGCCGTACTCCTCCAGCCCACGCGCCCGGGCTCCTCATTGCCTGCCACCCTAATTGGCCTCCATGGTCGGAACCTCTTTCAAGCATCAGTGGCCCTGCGACTGCCCGCCGATGCCACGAAGAATGTCTGCTTGGAGGTCGCACTCGCCGTGAGTCTGGGGATCGTCATCGAGCTGAACGCCATAGAGAATAAATGGATCTTCAAGAAGAAGACTGAGGCTGACGGTGGGATCGTGTGCCACCTGGAGGAGACCCTGGCGCTGCTCAAGATCCGGTCGGACATGGACGCCGCCTTCCGGGACGCCACCCTCAAGGGCCCACTCTGGGAAGAGGTCTCCAGGAAGCTGGCCGAGGAGGGGTACAGGCGGAACGCCAAGAAGTGCAAGGAGAAGTTCGAGAACGTTCACAAGTACTACAAGCGCACCAAGGACAGCCGCGCCGGCCGCAACGACGGCAAGACGTACCGCTTCTTCCGGCAGCTCGAGGCGATGCAAAGCACGTCCGGTGTGACGGCGGCTCCGATGGCATCGGCCCCGCCGCCGGCGACAGCCGTCGGGGTGCCTGGGGTGGTGGGACCCACGGCTCTACGGCCCCTCGCCGAGCCGCCGCCTGTTGGTGCCGCGGCCGCCGCCACGGCTGGCCTGCCGACGCCAGTGGTAGTGGGCAACTTGAGCTTCTCAACGTCCAACACGGAGGAGTACTCGGACGAGGACGACTCGGACGACGAGGGCACCGACGACATGGGCGGCGGCGCCGACGAGCGAGGGAAGAGGAAGCGGACGTCGGAGGGTGGCGCCGCGGCTGGTTCTGGCGGCGAGGCCGGGAGCGGCAAGATGATGAGGTTCTTCGAGGGGCTGATGAAGCAGGTGATGGAGCGTCAGGAGGCGATGCAGCAGCGGTTCCTGGAGGCCATCGAGAAGCGGGAGCAGGACCGCATGATCCGCGAGGAGGCGTGGCGGAGGCAGGAGATGGCGCGCCTGGCGCGCGAGCAGGAGATCCTCGGGCAGGAGCGCGCCATGGCTGCTACCCGCGACGCCGCTGTGCTCTCCTTCATACAGAAGATCACCGGGCAGACCATCCCCATGCCGTCCATCGCCGCGCAGGCCATTACATTCATGCCACCGCCGCCGCCTTCGCAGCCTCACGCCACGCCCATAGCATACTCCGCCGCGCCAGTTCATCCACGACCGCCGTCTTCGCAGCCACCTGCCACGCACTCGCCGCCTCAACCTCAACCCTCGCCACGGCAGCAGAAGCCGCCAACAATGCCGCCCGTGACGCCGCAGCCGCACAAGTCGCCGGCTCCAGCGACGCCACAGCTACAGCAGCAAGCGCCGGCCGTAAATTCAAGCTGCATGGACATCGTCGTGGTGCCCTCGGAAGCGCCGCACGACTCGTCGGGCTACGACGGGTCCGGTGGCGGCAGCGGACCGACATCGTCGCGGTGGCCCAAGGCGGAGGTGCACGCGCTGATCCAACTGCGGAGCAACCTGGACATGAGGTACCAAGAGGCCGGGCCCAAGGGACCGCTCTGGGAAGAGATCTCCGCCGGCATGCGGCGGATGGGCTACAACCGGAGCTCCAAGCGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAGGTGAAGGAGAGCAACAAGAAGCGGCCCGAGGACTCCAAGACGTGCCCCTACTTCCACCAGCTCGAGGCGCTCTACCGCAACAAGGCGGCGCTCGGCTCCCCCTCCGGCGCCGGCGGCGCACTGGCTTTGCCGCCGCCCGCAGTGCACGCCAATGCAGCTCCCCAGGAGCGCATCGAGGCGTTCACCGTCGCGGCGCCGATCTCGCAGACGGCTCCGCAGCAGCCACCTGTGGCCAAGAACGCCCCAGCAACGCCGGGAACGGCAAGGGTAATGGCGGCGGCGCGTGGGCAGGAGTCTCCGGGGGAGCGCAAAGGCTGGCGGCGAGCAACGGCGGCAGCAGAAGGCATCATGAAGGAGACGACGATGGAGCAGAGGCAGCCACAGCCGCAGGCGGCGCAGCAGGCTGCGATCAACAGCTACAACCGTACGGGCGGCGGCGGCGCCGAGAGCGACAACATGGACGAGGACGACGAGGACGAGGACGACTACGAGGACGAGGACGAGGAGGACGACCTCGACGGCAACAAAACGCAGTACAAGATCCAGTTCCAGGGGCAGCAACAACATCAGAATCAGCATCAACAGCACCACCACAACGTTGTCAGGCCGAACGCCACCTCGTCCGGCGGCGGCAACCCGCCTGGCGCTGCCGCTCCCAGCGCGCCGGCGGCGGCAACGACGACGGCCGGATCTTTCCTGGGCATGGTCCAGTAG
Protein Sequence:
- >TRIUR3_33328-P1|Triticum_urartu|Trihelix|TRIUR3_33328-P1
MAAMLARGQRLCQMVHDAGLRHGTEDRLQTVLATGWWMVAVDASYDTQYDQMIVSSTNKFTVAKKLADDIAVLLQPTRPGSSLPATLIGLHGRNLFQASVALRLPADATKNVCLEVALAVSLGIVIELNAIENKWIFKKKTEADGGIVCHLEETLALLKIRSDMDAAFRDATLKGPLWEEVSRKLAEEGYRRNAKKCKEKFENVHKYYKRTKDSRAGRNDGKTYRFFRQLEAMQSTSGVTAAPMASAPPPATAVGVPGVVGPTALRPLAEPPPVGAAAAATAGLPTPVVVGNLSFSTSNTEEYSDEDDSDDEGTDDMGGGADERGKRKRTSEGGAAAGSGGEAGSGKMMRFFEGLMKQVMERQEAMQQRFLEAIEKREQDRMIREEAWRRQEMARLAREQEILGQERAMAATRDAAVLSFIQKITGQTIPMPSIAAQAITFMPPPPPSQPHATPIAYSAAPVHPRPPSSQPPATHSPPQPQPSPRQQKPPTMPPVTPQPHKSPAPATPQLQQQAPAVNSSCMDIVVVPSEAPHDSSGYDGSGGGSGPTSSRWPKAEVHALIQLRSNLDMRYQEAGPKGPLWEEISAGMRRMGYNRSSKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLEALYRNKAALGSPSGAGGALALPPPAVHANAAPQERIEAFTVAAPISQTAPQQPPVAKNAPATPGTARVMAAARGQESPGERKGWRRATAAAEGIMKETTMEQRQPQPQAAQQAAINSYNRTGGGGAESDNMDEDDEDEDDYEDEDEEDDLDGNKTQYKIQFQGQQQHQNQHQQHHHNVVRPNATSSGGGNPPGAAAPSAPAAATTTAGSFLGMVQ