Information report for Tp57577_TGAC_v2_mRNA11906
Gene Details
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Functional Annotation
- Refseq: XP_024632484.1 — uncharacterized protein LOC11413989 isoform X1
- TrEMBL: A0A2K3P7M6 — A0A2K3P7M6_TRIPR; TNP1
- STRING: AES67379 — (Medicago truncatula)
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Actinidia chinensis: Achn124861
- Beta vulgaris: Bv8_180890_fhyg.t1
- Cicer arietinum: XP_004487156.1, XP_004487155.1, XP_004505494.1, XP_004505493.1
- Daucus carota: DCAR_007945
- Fragaria vesca: mrna29666.1-v1.0-hybrid
- Glycine max: Glyma.13G290500.1.p, Glyma.12G210900.1.p
- Lactuca sativa: Lsa017813
- Medicago truncatula: Medtr2g092960.1
- Solanum lycopersicum: Solyc12g010890.1.1
Sequences
CDS Sequence:
- >Tp57577_TGAC_v2_mRNA11906|Trifolium_pratense|Trihelix|Tp57577_TGAC_v2_mRNA11906
ATGAACCGAATTCAAAACAACCGATCTCAAAACCACAAACAACAACAGAAAGAAACAACACCCGCACAACAAAAATTGAACTCCGTCACCGGAGCTCTACCTTCTCCGTCCACCGTACTCGAAGATGGTTGGTCCGAAGAAGCCACGTTCACACTCATCGACGCTTGGGGTAAACTTTACAAGAAGCTTAACCGCAAAAACTTCCGTCAGTATCACTGGAAGGAAATCGCGAAAGCCGTAAACCAACACCACGGTTACAGTCGGAAATCTCTCCGAACTTACGTTCATTGCAAAAATCGATTCGACGCGCTCAAGAAGAAGTACGCAATCGAGAAAGCTAGGGTTTCTGAAAACGGTTTTTACGATAACGATGATGATGATGCATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACGTTTTCGCCGGAATTTATCTGCATTTGCTGCAGCGGCTGCTGCAGCAGCGGAAGCAGAGATCGATAATTCAGATTCCGATGACTCGTATTTTGATAATTCAGATGGTTCAGAGTTGAGCAATGAGAATAGGAAGAGGAAGAGAGGAAGAAAGGATGTGGAGTTCGGGTATAGAGAGGTTGCAGGAAGGAATAATAGGGAATTTCGGAGTACAGAGGTTGCAAATTTTATGGAGAAGTTTAGTGAGGTACAGGAGAGAGTTGAGTCATCGAAACAGCGAAGAAATGCTAAGGAGAAGTTTAGTGAGATACACGAGAGAGTTGAGTCATCCAAGCAGCGAAGAAATGCTAAGGAGAAGTTTAGTGAGATACACGAGAGAGTTGAGTCATCGAAGCAGCGAAGAAATGTTGATTTGGAGAAACGGAATATGCAATTTGAAAAGGATTGTCAGAGGATGCTGCAGCTGCAAAATGCCAACCACTCTAAGGAAACGGAAAGAACGACTTCAATGAATGATCGAAATGAACAAATCTCAAAAGTTAAAAATCTACCAGCTCCTACCCAAAAAAGCCAGTCTACCAAAAGGACCGTTAGAGGTGCTACGCAGATGAAGAAGTTAGCACATGCCCTTATTGATGGACAAAAATTATCGATTGAATTTGATGAATCAACTGCAAAACCTTTAGGGGAAAACAAGACAAAGTTCAGGAGTTACGTGGCTTTCCTTGGTCGAAGCAAAGTCAGTATTTTGACGGATGATTGGGACTCCGTAGATCAGAGCGTGAAGGATGAAATTTGGACAGATATCCTGAAAGTATGGGATGTTCCTCATTCTGGATTCTTACGAAAGAAATTGGTTGCATATGCGGGTGAGCGTTGGAGGGCATTTAAGACTAATTTGACTTCCAGATATATACATGGGGATCTTAGGGACAGATCTCCTCTTGAGATCTATAATTTTCTTGATGAAGGAACATGGCAGGCGTTTGTTCAGACACGACTGGACCCTTCCTTCCAGGCGTTTGTTCAGACACGACTGGACCCTTCCTTCCAGGAGATTAGAAAGAAAGCGCAAATGCGTACGGCTCAGAATAAAACCCCTCACAGATTGTCTCGCGGGGGATATGACTTGCTCCAAGAGAAGATGATGCAAGAGAAATTAAAAGAAAAGCCAGAATCTTTGGGTGGTTCAGTAGCTGCACCGCCATCTCCACCACCACGCCATGAGCAATGGAAGAGAGCACGACAAAAGCCATCAGGAGATTACACATCTGAGGACACACGCATTATTGCCGAGAAAATTGATTCTTTGGTTGAAAAAACATCTCAAGGAACTTTTGTTCCAGAAGGACGAAATGATATTTTGACAGAAGCCATTGGCCGACCTGAGCACTCCGGCTTTATTCGTGGTGTTGGTGGAGGTCTGGGTATTCGACAATACTTTGGACCACCACCACGTGGCTCCACCCCTCGTGTTTTTAGTAGTGAACAAATACAGACCATAAAAGTGGAGCTCACTCAGCAAATTAAAGAGGAATTGATGCAGAATTTGGAAGCTATGGGTTTCTCTAGAAAACCCTCGAATTTCCCTTCTTGTTCTCGTAATACAGCTGTACCTGCGAGCAGGAAGGGTAGTTCATCTGTTGTGCCTCCTATAGCGGAGGAGGATGAAATCCCAGAACAATGTGAACTATATGTTGATAATTTATTTCATCCGGTGGCCTATGGTAATGTGTACAAGTTGGGGCCTACCATACATAATCAGATGCTAGAAAATGATATGGTGAGGGTGGCAGTTAGTGAGGTGCTAGAGGCACATGCTCAAGTGCCTATTCCCACTGACGAGGTGGAAACGGTTGAGCAGGCCCTCAACAATTTCATTCAATGGCCGAAAAGACTTGTGCAGATTGTTTCTGATAAGGATTTTGATGTTGATGGATCTGAGAAAGACGGCGTTTCGCCCAAAAAGTCTGAGCCTCAACTAGATTCCGTCCAACAATTGGCTGAGAAAGACGATGTTTCACCCAAAAAGTCTGAGCCTCAACTAGATTCTGTCCAACAATTGGTTTTAAAGGCGATGTGTATGTCAGAATCTATAAAGCTCGATTTGGAACATGATAGGATGAAGTCTCTTTGGCTCTCACAGAGAGATATTATGGAGTTGTGTATGGGTAAACAAGAGTTATCCATAACTATTCTACGATTGTGGTTAACACAACCAGAGAGTTACGAGTCCGGCTACTATATTATGATACATACATTGAATATTGTATCCGCTGGTATTATTAATTTATGGATGAAGGTATTTGGAAATCCAGAACCATTCCAGGAGGATGAACTTGTAAATGTTCGACAACGATGTGCAAGTTTGATCCTTGATTTTATTCAAGGAGTTTAA
Protein Sequence:
- >Tp57577_TGAC_v2_mRNA11906|Trifolium_pratense|Trihelix|Tp57577_TGAC_v2_mRNA11906
MNRIQNNRSQNHKQQQKETTPAQQKLNSVTGALPSPSTVLEDGWSEEATFTLIDAWGKLYKKLNRKNFRQYHWKEIAKAVNQHHGYSRKSLRTYVHCKNRFDALKKKYAIEKARVSENGFYDNDDDDAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFRRNLSAFAAAAAAAAEAEIDNSDSDDSYFDNSDGSELSNENRKRKRGRKDVEFGYREVAGRNNREFRSTEVANFMEKFSEVQERVESSKQRRNAKEKFSEIHERVESSKQRRNAKEKFSEIHERVESSKQRRNVDLEKRNMQFEKDCQRMLQLQNANHSKETERTTSMNDRNEQISKVKNLPAPTQKSQSTKRTVRGATQMKKLAHALIDGQKLSIEFDESTAKPLGENKTKFRSYVAFLGRSKVSILTDDWDSVDQSVKDEIWTDILKVWDVPHSGFLRKKLVAYAGERWRAFKTNLTSRYIHGDLRDRSPLEIYNFLDEGTWQAFVQTRLDPSFQAFVQTRLDPSFQEIRKKAQMRTAQNKTPHRLSRGGYDLLQEKMMQEKLKEKPESLGGSVAAPPSPPPRHEQWKRARQKPSGDYTSEDTRIIAEKIDSLVEKTSQGTFVPEGRNDILTEAIGRPEHSGFIRGVGGGLGIRQYFGPPPRGSTPRVFSSEQIQTIKVELTQQIKEELMQNLEAMGFSRKPSNFPSCSRNTAVPASRKGSSSVVPPIAEEDEIPEQCELYVDNLFHPVAYGNVYKLGPTIHNQMLENDMVRVAVSEVLEAHAQVPIPTDEVETVEQALNNFIQWPKRLVQIVSDKDFDVDGSEKDGVSPKKSEPQLDSVQQLAEKDDVSPKKSEPQLDSVQQLVLKAMCMSESIKLDLEHDRMKSLWLSQRDIMELCMGKQELSITILRLWLTQPESYESGYYIMIHTLNIVSAGIINLWMKVFGNPEPFQEDELVNVRQRCASLILDFIQGV*