Information report for Tp2g20210
Gene Details
Functional Annotation
- Refseq: XP_013677968.1 — trihelix transcription factor GTL2
- Swissprot: Q8H181 — GTL2_ARATH; Trihelix transcription factor GTL2
- TrEMBL: A0A078IRA5 — A0A078IRA5_BRANA; BnaC07g49430D protein
- STRING: Bo2g152980.1 — (Brassica oleracea)
- GO:0045893 — Biological Process — positive regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0001158 — Molecular Function — enhancer sequence-specific DNA binding
- GO:0005516 — Molecular Function — calmodulin binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Arabidopsis thaliana: AT5G28300.1
- Brassica napus: GSBRNA2T00120548001, GSBRNA2T00007154001, GSBRNA2T00144271001, GSBRNA2T00007178001
- Brassica oleracea: XP_013615580.1, XP_013599199.1
- Brassica rapa: XP_009129840.1, XP_009151247.1
- Gossypium arboreum: Cotton_A_14977_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A11G2296
- Raphanus raphanistrum: RrC19400_p1
Sequences
CDS Sequence:
- >Tp2g20210|Thellungiella_parvula|Trihelix|Tp2g20210
ATGTTTAATGGTGGAGTACCGGAGCAGATCCACCGGTTCATAGCATCTCCACAGCCACCTCCTCCGCTTCCGCCGCATCAACCGGCGACGGAAAGATCACTCCCTTTTCCTGTCTCATTCGCTTCCTTTAACTCCAACCAACAAGCCCAACATATGTTGAGCCTCGACAATCGTAAGATCATTCACCATCATCATCACCATGACATCAAAGAAGGTGGTGCTACTTCTGAGTGGATGGGTCATACGGATCATGATAGCGATACTCCTCGTCACCATCATCATCATCCATGGTGTAGTGATGAAGTCCTTGCCCTTCTTAGGTTCAGATCTACGGTGGAGAATTGGTTCCCTGAATTCACTTGGGAGCACACCTCAAGAAAGTTGGCAGAAGTTGGGTTTAAGAGGAGTCCACAAGAATGCAAAGAGAAATTCGAAGAAGAAGAGAGAAGATATTTCAACAGTAATAACAACACTAATGATCATCACATGAGCAATTACAACAACAAGGGAAATTATAGGATATATAGTGAGGTTGAAGAGTTTTATCATCATGGCCATGATGATGATGAGCATGTCGTCTCATCAGAAGTTGGGGATAACCAAAATAAGAGGAACGATTCGCTAGAGGGAAAAGGAAACGCTGAGGAAACGGGACAAGACTTATTGGAGGAGGGCAAAAGTGATCATCAGGATCAGGGTCAAGTAGAAGAATCATCAATGGGGAATAATATAAACTCCAACACTGATAATGTTGGAAAAGTTGGAAACGTTGAAGATGGTTCGAAGTCATCATCATCATCAAGCTTGAGGGACAAGAAGAAGAGGAAGAGGAAGAAAAAGAAGGAGAGGTTTGGTGTGTTGAAAGGGTTTTGTGAGGGTCTTGTGAGGAACATGATAGCCCAACAAGAGGAGATGCATAAGAAGCTTCTTGAAGATATGGTGAAGAAGGAAGAAGAAAAAATGGTAAGAGAGGAAGCTTGGAAGAAGCAAGAGATGGATAGGCTTAACAAAGAGGTCGAGATTAGAGCACACGAACATGCTATGGCTAGTGATAGAAACACCAACATCATCGAGTTCATATCCAAGTTCACAGACAATGATAATCATGATGATGGGAATTATAAGCTCCAAAGCCCAAGCCCTTCTCAAGATTCATCTTCCTTACTTCTACCAAAACCCCAAGGCAACATGAAGTTTCATACTTCGTCATCACTCTTACCTCAAACCCTAACTCCACATAACCCTTTACATTCTCTACAAACCAATCACGAATCAGTTGAACCCATTTCAACTAAAACCCTAAAAACGAAAACCCAAAACCCAAAACCTCCAAAAAGTGATGACAAAAGTGATCTTGGCAAGAGATGGCCTAGGGATGAGGTGTTGGCTCTTATCAACATCAGACGCAGTATCAGTAGCATGAATGATGATGATCTTCACAAAGATGGGATCTCATTATCATCCTCAAAAGCTGTTCCTTTGTGGGAAAGAATATCCAAGAAAATGTTGGAGACTGGGTACAAGAGAAGTGCCAAGAGATGCAAAGAGAAATGGGAAAACATCAACAAGTATTTTAGGAAGACAAAAGATGTTCACAAGAAGAGACCACTTGACTCAAGGACTTGTCCTTATTTTCACCAACTTACAGCTTTGTACAGCCAACCCTCCACTGGGACCACCACCACCGTCACCGACACGTCAGCCGGAGAGCTGGAAACCCGACCCGAGGAAAACCGGGTTGGATCCGGAGATCCTGATATTCCTGCAGTCATGCATGTAGATGCAGATGGTGCCGGCGAAAAAAAGCAATTCAATACTATCTATATATATATTACCAGTATAATTTCCTTTTTCTTGCTTTTTTTCCGCCTCTAA
Protein Sequence:
- >Tp2g20210|Thellungiella_parvula|Trihelix|Tp2g20210
MFNGGVPEQIHRFIASPQPPPPLPPHQPATERSLPFPVSFASFNSNQQAQHMLSLDNRKIIHHHHHHDIKEGGATSEWMGHTDHDSDTPRHHHHHPWCSDEVLALLRFRSTVENWFPEFTWEHTSRKLAEVGFKRSPQECKEKFEEEERRYFNSNNNTNDHHMSNYNNKGNYRIYSEVEEFYHHGHDDDEHVVSSEVGDNQNKRNDSLEGKGNAEETGQDLLEEGKSDHQDQGQVEESSMGNNINSNTDNVGKVGNVEDGSKSSSSSSLRDKKKRKRKKKKERFGVLKGFCEGLVRNMIAQQEEMHKKLLEDMVKKEEEKMVREEAWKKQEMDRLNKEVEIRAHEHAMASDRNTNIIEFISKFTDNDNHDDGNYKLQSPSPSQDSSSLLLPKPQGNMKFHTSSSLLPQTLTPHNPLHSLQTNHESVEPISTKTLKTKTQNPKPPKSDDKSDLGKRWPRDEVLALINIRRSISSMNDDDLHKDGISLSSSKAVPLWERISKKMLETGYKRSAKRCKEKWENINKYFRKTKDVHKKRPLDSRTCPYFHQLTALYSQPSTGTTTTVTDTSAGELETRPEENRVGSGDPDIPAVMHVDADGAGEKKQFNTIYIYITSIISFFLLFFRL