Information report for Sopim03g006900.0.1
Gene Details
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Functional Annotation
- Refseq: XP_004234266.1 — uncharacterized protein LOC101253357
- TrEMBL: A0A3Q7FFT2 — A0A3Q7FFT2_SOLLC; Uncharacterized protein
- STRING: Solyc03g006900.1.1 — (Solanum lycopersicum)
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Sequences
CDS Sequence:
- >Sopim03g006900.0.1|Solanum_pimpinellifolium|Trihelix|Sopim03g006900.0.1
ATGGATGAAAACAAAGGAGATACCACCAAGAAACAACATTTATCTAACTCTCCAGTTGACCCTCATGAACAAGATTCACCAGATAATACTATTCCGCTACAGCATCCGGTTGTTTCTGCTGCTCCTTATATTTCTTCTTCTGCACTGTATAATATACCGACTGCTGCTGCTGCTACTTCTTTCGAACAACAGCATCAATTTGATGCTGTTAATACAAAACGGCCAAGATATACTTCAAGTCAATGGAAATTCATTTCTTCTCATCATCAACAACAACAACAGCAGAAGGCTGGTACTATACTGAGTGCGGAATCAAGTCCGATATCGCCTACAGCCCACGCTACTACCGCTACCAATATTCCTCAAACTCAAGTACCAACCGCGTCTTCTTCAGACACGGCTTCTTCTCCTTCCCACTCTCCTCGGCCTTGTTCAGAGCCGAGTAAGAGCGAAGGAGGAGAACAAGTTCACCAACAATTTAGGAAAGGGAAATACGTGAGTCCGGTTTGGAAACCTAACGAGATGTTGTGGTTAGCTAGGGCTTGGAAAATTCAGTACCAAGGTAGTGGTTCATCATCAGAGCTTGTTCATCTAGAAGGTTCTCCAGGAGCAGGAAGTGGAAGAGGCAAAACTAGAGCTGATAAAGATAGAGAAGTGGCTGAGTTTCTCAACAGGCATGGAGTTAACAGAGATGCTAAAACTGCTGGGACTAAATGGGACAATATGTTGGGTGAATTCAGAAAAGTTTATGAATGGGAAAGAGGTGCTGAGAGGGAACAAATTGGAAAGAGTTATTTTAGACTCTCCCCTTATGAAAGGAAGATTCATAGATTACCAGCTTCATTTGATGAACAAGTATTTGAAGAATTATCTCAATTTATGGGCTCAAGAATGAGGACTCCTCAAACTAGAATCGGAACTCAGTCCAATAGTATTGCTGATGATATTCCTACACCTCTCATTGTTACCAAGTCTTTGCCTCCTCCTCCTCCACCCTTCAGGGAAGATGAACTTCCTCACTCTGCGAGGGCGAAACAATTGGTAATGTCAAGGGGAACTGAAACATTAATTCATGGAACAAGAGGTGGGTTCTTAGGGTTTGAAACAGTACAACCGTCTTCTTCATTAGATATTATGGGTGGTGGTCCATCTTCTAGTGGTTCAAAGGAGCTTCGGCGCATCGGGAAGATTAGGATGATATGGGAGGAGTCAGTGAGTTTGTGGGCTGAAGAAGGTGAGCATCATAGAGGTAGAGTAAAACTACAAGGTTGCAGTTTTTTAAATGCAGATGAAATTGCATTTTTGGATGATTCTATGGTGGCTAGCACTATGGAGGCCTTTGAAGATGGACCAATGAAAGGCTTTTCTGTTGATAGATTCCAATCTGGGATACAACTCAAAGTCTTTGGCAGAAGAAAATCTTCTTCACCTATTGCTCCTTGTGGTCCAAGTGAAAGATTGCAGCTTCCCTCTTCTGAATTTCCCATCAGATCAACTACGCCTTGGGAATTTCAAGATCCAACTGAGTACTACGTTGGTTGTCTCAGATCTCCTCCTCCTACACTTCCAACCTTGTTTGAGCTATCATGGCATTTGCAACAGCCACCACCGGAGGAACTCCGTTTCCCTCTCCGACGAGACGTGTTCAAAGACTTGCCTCAAGGGAGAGAATTATTCTTCACAACCTCCTCAACTGAGCTACTAGACTGTAGAGGCATCACTTATGATGTATTGACTTGTATCATGCGTTCAAACCCTAGTCTCAACGCTGCCACCGCAACCGATCGGGATTCCTACATTGGCCTTTGGGATGATTGCATTAACAGGATGATTTCCAAGTTTTGTTCCATCGAAATGGTGTTTGTACGGAAATCTTCGTCTTCTCTCGCGGAGACCGTGCAAGATCAATGGCCTAACGTTACTGCTTTCTTAAGGAATTTTTGCCTGTGGAGAGGAGAGGAAACTGATCAGTTAAGAGAAGGTCAACTAGATCCTTCGTCTTCCATTGTAGAGAAATTCCTTTGGAGTTACATGGACCTTCCTTACGTCTTAGGGTACTATGCCGTTGGATTTATCGTTACGTTCTGCGCGTTGAGTCGATCACAGGAACGAATCATCCGAACCGATCTCTACACTGTGGATCTGTCAACACCAGTGGAAAGATTAAAAGCTTTAGTACCGTGCTGGAGAATCGCCGGATTATTACCGTTATTAGCTGATAAATGCTTCCATTACATGAGTAGCAATTTTAAACATCTTCTGTACACTGATTTTGAGCGGACTGATTTTGGGAATGGAAATTTCATGGAGATGACTCCGAATACAGTTGTGAGATATTTTTCTAGTAAGAGAAAATGGTTGGGGATGAAGGAGATCTACGATTTTCTGGATCACAGAATCCCACACGCCGAATTCGTGGTTAGGGCATCGGAGAAAGATCTGGCGCTGGTGTTCAAGCCTAGAGGTTGCAAATTCAAGCCAGTTAATTGCGATCAATTAATCGAAGCATTGAAACAGGTCACAAAAGCGTTGGTCGCACTTCATGATCTTTCGTTTATGCACAGGGATTTGGGATGGGATAAAGTGATGAGAAGAATCGACAGGGAGAATGAATGGTTCATTACGGGATTTGACGAGGCGGTGACTGCACCGCAGCTGTATCCTCACGGAGGAGCAGCGGCGGCGGGGACGACGGGGATCGGTAGGCATCCGCCGGAGATGGGGAGGAATTATCATGGAGTCAAAGTAGATGTATGGGGAATAGGGCAATTAGTGAAGAGCTGTGGATTAGTAGGGGTGCCGAAATTGCTGAGGGAATTGCAGAATAGGTGTTTGGACCATAACCCGGAGCAAAGACCGACGGCAGCAGACTGCTATCGCCATTTGTTACAGTTACAGTCTTCCATCTCTGCAGCCGCCGCCGGAGGGTATTGA
Protein Sequence:
- >Sopim03g006900.0.1|Solanum_pimpinellifolium|Trihelix|Sopim03g006900.0.1
MDENKGDTTKKQHLSNSPVDPHEQDSPDNTIPLQHPVVSAAPYISSSALYNIPTAAAATSFEQQHQFDAVNTKRPRYTSSQWKFISSHHQQQQQQKAGTILSAESSPISPTAHATTATNIPQTQVPTASSSDTASSPSHSPRPCSEPSKSEGGEQVHQQFRKGKYVSPVWKPNEMLWLARAWKIQYQGSGSSSELVHLEGSPGAGSGRGKTRADKDREVAEFLNRHGVNRDAKTAGTKWDNMLGEFRKVYEWERGAEREQIGKSYFRLSPYERKIHRLPASFDEQVFEELSQFMGSRMRTPQTRIGTQSNSIADDIPTPLIVTKSLPPPPPPFREDELPHSARAKQLVMSRGTETLIHGTRGGFLGFETVQPSSSLDIMGGGPSSSGSKELRRIGKIRMIWEESVSLWAEEGEHHRGRVKLQGCSFLNADEIAFLDDSMVASTMEAFEDGPMKGFSVDRFQSGIQLKVFGRRKSSSPIAPCGPSERLQLPSSEFPIRSTTPWEFQDPTEYYVGCLRSPPPTLPTLFELSWHLQQPPPEELRFPLRRDVFKDLPQGRELFFTTSSTELLDCRGITYDVLTCIMRSNPSLNAATATDRDSYIGLWDDCINRMISKFCSIEMVFVRKSSSSLAETVQDQWPNVTAFLRNFCLWRGEETDQLREGQLDPSSSIVEKFLWSYMDLPYVLGYYAVGFIVTFCALSRSQERIIRTDLYTVDLSTPVERLKALVPCWRIAGLLPLLADKCFHYMSSNFKHLLYTDFERTDFGNGNFMEMTPNTVVRYFSSKRKWLGMKEIYDFLDHRIPHAEFVVRASEKDLALVFKPRGCKFKPVNCDQLIEALKQVTKALVALHDLSFMHRDLGWDKVMRRIDRENEWFITGFDEAVTAPQLYPHGGAAAAGTTGIGRHPPEMGRNYHGVKVDVWGIGQLVKSCGLVGVPKLLRELQNRCLDHNPEQRPTAADCYRHLLQLQSSISAAAAGGY*