Information report for Sobic.004G070200.1.p
Gene Details
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Functional Annotation
- Refseq: XP_021315488.1 — uncharacterized protein LOC8079424 isoform X1
- Swissprot: Q84W56 — RNJ_ARATH; Ribonuclease J
- TrEMBL: C5XWZ4 — C5XWZ4_SORBI; Uncharacterized protein
- STRING: Sb04g005900.1 — (Sorghum bicolor)
- GO:0009658 — Biological Process — chloroplast organization
- GO:0009942 — Biological Process — longitudinal axis specification
- GO:0060918 — Biological Process — auxin transport
- GO:0009507 — Cellular Component — chloroplast
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Sequences
CDS Sequence:
- >Sobic.004G070200.1.p|Sorghum_bicolor|Trihelix|Sobic.004G070200.1.p
ATGGTGGCGCTCGCCTCACTCTCGTCTCTCTGCCCCTGCGGCATCGCCCGCCGCCGCGCTGCCTCCGCCTCCTCATCCGTCGCCGTTTCCATCTCGTGCTGCGCCGTCGCCACCCCGTCCTCCTCAGGGAAAGGGCCCCAGGAATCTAGAACACCCCGAAGAAGGCTGAGGAAAACTGAGGGTGCCACCAAGAGCTTGGAAGATTCGGTCAAGCGAAAGATGGAGCAGTTCTATGAAGGGGTCGATGGTCCACCTCTGCGAGTGCTCCCTATTGGCGGTCTTGGGGAAATCGGCATGAATTGCATGCTTGTGGGGAATTATGACCGATATATCTTGATTGATGCTGGGGTTATGTTCCCAGATTATGATGAGTTTGGTGTGCAAAAGATTATCCCAGACACCACGTTCATCAAGAAATGGAGCCACAAAATTGAAGCAGTTATCATCACACACGGCCACGAAGATCACATCGGTGCGTTGCCTTGGGTCATTCCAGCACTCGATTCAACAACACCGATTTTTGCATCATCTTTCACCATGGAGCTAATAAAGAAGCGTTTGAAGGAGTTTGGGATCTTCCTCTCATCCAGGCTTAAGGTTTTAAGAATTAAAAAGAGATTTCAAGCTGGACCTTTTGAAGTCGAACCCATCCGTGTAACTCATTCAATTCCTGACTGTTGTGGCTTAGTGCTTCGCTGTGGTGATGGCATAATTTTCCATACTGGTGACTGGAAAATTGATGAATCACCAGTGGATGGAAAAATTTTTGACCGACAAGCATTGGAGGAGCTCTCCAAAGAAGGTGTTACTCTTATGATGAGTGACTCAACAAATGTTCTATCCCCTGGAAGATCAATCAGTGAATCTGTTGTTGCTGGTTCATTGTTGCGACATATTTCGGAAGCAAAAGGAAGAGTAATTACGACACAATTTGCCTCAAACATACATCGAATTGGGAGCATCAAAGCTGCTGCAGATTTAACTGGTCGAAAAATGGTGTTTGTTGGAATGTCACTCAGGACATACCTTGAAGCTGCTTTCAAGGATGGAAAGGCACCAATGGATCCATCAACCTTGGTCAAGGCAGAGGACATGGATGCGTATGCCCCTAAAGATCTTCTGGTTGTCACTACGGGTTCACAAGGAGAGCCACGTGCAGCTCTGAATCTTGCATCTTATGGGGGAAGTCATGCTCTTAAACTATCAAAAGAGGATGTCCTTCTTTATTCAGCTAAGGTTATTCCTGGAAACGAGACGCGGGTAATGAAGATGATGAATCGTCTCACTGATCTTGGCCCAAAAATTATCATGGGTAAAGATTCTGGCCTGCATACCTCTGGGCATGCCTACCGAGAGGAGCTGGAGGAAGTCCTTCGGATTGTTAAACCACAACATTTCTTGCCTGTTCATGGAGAACTCCTATTTCTCAAAGAACATGAATTGCTTGGAAGATCAACTGGCATAAGGCACACAACTGTAATAAAAAATGGAGAGATGCTTGGTGTGTCACATCTAAGAAGCAGAAGAGTTTTGTCCAATGGATTTGTTTCATTAGGGAAGGAGGATCTTCAGCTCATGTATAGTGATGGGGACAAGGCTTTTGGTACATCCACTGATCTCTGCATTGATGAGAGACTAAGAATTGCATCTGATGGCATTATTTTTGTCAGCATGGAGATCTTCCGACCTCAGAAGGAACATGGTTTAGCGCAATCAGGTTTGAAAGGAAAATTTAAGATTACTACAAGATGTCTATGGCTTGATAATGGAAGATTGTTGGACGCACTCTACAAAGCAGCTCATGCTGCATTGTCAAGCTGTCCTGTGAATTGTCCACTTAGTCACATGGAGAGGATGGTAGCTGAAATCTTAAGGAAAATGGTGCGGAAGTATAGTGGAAAGAGGCCTGACGTCATTGCGGTTGCTACGGAGAATACCACGGCAGGTTTCCCAGAACACCTCGATGCTAAATCATCTGGAAATTTTGGACCTTCCTCAACTACTAGCCATTTGAGCAGGAGTCCAGCTACGAGTCTTGAAGGCAGTTATAAAACACACCCAGACAACCCAGAGGTGGATGCTGAAGTGCTTTGTCACACAGAAACCCCTCCTAAGGCAGTGAGAACAACACCTGATGATGCAACCACAAGCTCCAATGGTGAAGCATTCTTCTCTTCAGATTTACATCAGCCTAAAACATTGGAGCACTTTTGGGAGTCATTCAAATCCCCTACAGCTGTTAAAATTGCACGAATTGTCAATGGGGGGAACAAACAAAATCTCAGCAAGATTGGCATAATGGGTAAGGACTCATCAATCCAGTCAGCTCCTGCTCCAGTTAAGTCTTCAAAAAAGAACAAGTGGAAACCTGAGGAAATCAAGAGCTTAATACAGATGCGTGGCGAAATGAATGAGAAATTTCAGAGCGTGAAAGGAAGAATGGTTCTGTGGGAGGAGATTTCTGATACCATGTTGAACCAAGGAATAAGTCGTACGCCGGCACAGTGCAAATCTCTATGGACATCGTTAGTTCAGAAATATGAGGAAAGCAAGAAGGACATGGAAAGCATGAAGACGTGGCCGTATTTCTCGGCCATGGATAGGATTCTATCGCAGCAAGGGGAAATGGCAACAAAAGGGTAG
Protein Sequence:
- >Sobic.004G070200.1.p|Sorghum_bicolor|Trihelix|Sobic.004G070200.1.p
MVALASLSSLCPCGIARRRAASASSSVAVSISCCAVATPSSSGKGPQESRTPRRRLRKTEGATKSLEDSVKRKMEQFYEGVDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDYDEFGVQKIIPDTTFIKKWSHKIEAVIITHGHEDHIGALPWVIPALDSTTPIFASSFTMELIKKRLKEFGIFLSSRLKVLRIKKRFQAGPFEVEPIRVTHSIPDCCGLVLRCGDGIIFHTGDWKIDESPVDGKIFDRQALEELSKEGVTLMMSDSTNVLSPGRSISESVVAGSLLRHISEAKGRVITTQFASNIHRIGSIKAAADLTGRKMVFVGMSLRTYLEAAFKDGKAPMDPSTLVKAEDMDAYAPKDLLVVTTGSQGEPRAALNLASYGGSHALKLSKEDVLLYSAKVIPGNETRVMKMMNRLTDLGPKIIMGKDSGLHTSGHAYREELEEVLRIVKPQHFLPVHGELLFLKEHELLGRSTGIRHTTVIKNGEMLGVSHLRSRRVLSNGFVSLGKEDLQLMYSDGDKAFGTSTDLCIDERLRIASDGIIFVSMEIFRPQKEHGLAQSGLKGKFKITTRCLWLDNGRLLDALYKAAHAALSSCPVNCPLSHMERMVAEILRKMVRKYSGKRPDVIAVATENTTAGFPEHLDAKSSGNFGPSSTTSHLSRSPATSLEGSYKTHPDNPEVDAEVLCHTETPPKAVRTTPDDATTSSNGEAFFSSDLHQPKTLEHFWESFKSPTAVKIARIVNGGNKQNLSKIGIMGKDSSIQSAPAPVKSSKKNKWKPEEIKSLIQMRGEMNEKFQSVKGRMVLWEEISDTMLNQGISRTPAQCKSLWTSLVQKYEESKKDMESMKTWPYFSAMDRILSQQGEMATKG*