Information report for SMil_00013349-RA_Salv
Gene Details
|
|
Functional Annotation
- Refseq: XP_011073024.1 — uncharacterized protein LOC105158090 isoform X1
- Swissprot: Q84W56 — RNJ_ARATH; Ribonuclease J
- TrEMBL: A0A4D8YXA3 — A0A4D8YXA3_SALSN; Ribonuclease J
- STRING: Migut.I00512.1.p — (Erythranthe guttata)
- GO:0009658 — Biological Process — chloroplast organization
- GO:0009942 — Biological Process — longitudinal axis specification
- GO:0060918 — Biological Process — auxin transport
- GO:0009507 — Cellular Component — chloroplast
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Daucus carota: DCAR_016404
- Gossypium hirsutum: Gh_D07G0523, Gh_A07G0459
- Manihot esculenta: Manes.14G052700.1.p, Manes.14G052700.2.p
- Nicotiana benthamiana: Niben101Scf19230g01024.1
- Nicotiana tabacum: XP_016475717.1, XP_016442576.1
- Populus trichocarpa: Potri.012G095800.1
- Ricinus communis: 30147.m014528
- Sesamum indicum: XP_011073024.1, XP_011073026.1
- Solanum lycopersicum: Solyc03g111260.2.1
- Vitis vinifera: GSVIVT01008515001
Sequences
CDS Sequence:
- >SMil_00013349-RA_Salv|Salvia_miltiorrhiza|Trihelix|SMil_00013349-RA_Salv
ATGGCGGCTTTGAGCACAATTTCACTATGTCCGCACAAGCTCTTTTGGTGTCAGCCAAAGCCCAGACGGCGCTTCATTTCCTGTTGTGTATCCGTCCCTTCAGTAAAAGGTATACGTGGCTCCAAGGTACCTAATAGAAGGTTTGGAAGAAGAGAAGGAGCTGGAAAGAGTATGGAGGATTCGGTTAAACGCAAGATGGAGCAATTTTATGAAGGCTCTGATGGACCGCCTTTACGTATACTGCCTATTGGTGGCTTAGGAGAAATAGGGATGAATTGCATGCTAGTGGGGAATTACGATCGATATATTCTGATTGATGCTGGTATTATGTTCCCAGACTACGACGATCTAGGTATCCAGAAGATTATACCTGATACCACTTTTATCAAAAAATGGAGCCACAAAATTGAAGCTGTAGTTATTACTCATGGGCACGAAGATCACATTGGTGCGTTGCCTTGGGTTATTCCAGCTCTGGATTCTCATACACCAATATTTGCTTCGTCCTTCACGATGGAGCTTATTAAGAAGCGTCTAAAGGAGTTTGGGATCTTTCTTCCATCTAGACTTAAGGTGTTTAATACACGGAGAAGATTTGTTGCCGGACCATTTGAAGTTGAGCCAATAAGAGTGACACATTCTATTCCAGATTGCTGTGGGTTAGTTTTCCGGTGTGCTGATGGTACTATTCTTCACACAGGGGACTGGAAGATAGATGAGTCGCCATTGGATGGGAACGTTTTTGATCGTGAAGCTCTGGAAGAACTTTCAAAAGAAGGAGTGACTTTGATGATGAGTGATTCGACAAATGTGCTTTCACCAGGAAGGACACTAAGTGAGACAGTTGTGGCTGATTCGTTATTGAGGCATATATCAGCTGCGAAAGGAAGGGTTGTCACCACTCAATTTGCCTCAAATATTCATCGGCTTGGCAGTGTAAAAGCTGCAGCTGATCTGACTGGGCGGAAATTGGTATTTGTTGGTATGTCCTTGAGGACTTACCTTGATGCTGCATGGAAAGATGGAAAGGCACCCATTGATCCTTCAACTCTGGTGAAAGTGGAAGATATTGATGCTTATGCCCCAAAAGACTTGCTAATTGTTACCACTGGTTCTCAAGCAGAACCACGTGCAGCACTGAATCTTGCCTCACATGGAAGCAGCCATTCCCTCAAGTTGAACAAAGAAGATCTAATCTTATATTCTGCTAAGGTAATCCCAGGCAATGAGACAAGAGTCATGAAAATGATGAATCGCCTTGCAGAAATTGGACCACAAATAGTTATGGGGAAGAATGAACTGCTGCATACATCTGGCCATGCCCATCGCGAAGAACTGGATGAAGTGCTAAAAATTGTTAAACCTCAACACTTCCTGCCGATTCATGGAGAGCTCTTATTCTTGAAAGAGCATGAGTTGCTGGGAAGATCAACTGGGGTTCGGCATACTACTGTTATAAAGAATGGGGAGATGCTAGGGGTGTCACATTTGAGAAATAGAAGAGTTCTATCAAATGGGTTCATTTCCCTTGGTAAAGAGAATCTGCAGTTAATGTACAGTGATGGTGACAAAGCATTTGGCACAGCAACTGAACTATGTATTGATGAGAGAATGAGAATTGCATCGGATGGTATTATAGTTGTCAGCATGGAGATTATGCGTCCAGATGGTTCAGTTGAGAAGACATTAAAAGGAAAAATTAGAATTACGACACGATGCTTATGGCTAGATAAAGGGAAACTTTTGGATGCACTTCATAAGGCTGCACATGCTGCACTGTCGAGCTGCCCAGTGACTTGTCCTCTGGCCCATATGGAAAGAATTGTATCCGAAGTTTTAAGAAAAATGGTGAGGAAGTACAGTAGCAAAAGACCTGAAGTGATAGCAATTGCTATTGAGAATCCAGCTGGAGTGCTTGCTGATGAAATCAATGAAAAACTATCGGGAAAATCGCATATCAGTTCTGAGTTTTCAGCATTGAGAAAAGCAGTTGATAGACATGAGAAGAGAAAACAACCAATTGCTAGGCTTGAGGAAGATGTCAATGGCCTTGCACTTGAAAGAAGTACATCAGCACAAGAATTAGAAGATCAGGATTTTGATGAGGTTCAAGGTGAAATGGCTGCATCAACTTCTGGATTGCCAGATAGAGCGCTAAAAACCAATGAACCAGATGTCTTTTGGAAGTCATTTGTATCCTCATCAGAGCCCATTCAATCTGAACATAATGTTGAATTGCTTCCAGCAGCAGAACACAAAGAAAAAGGCAAAGAAGAAGGTAGTAAAGTGGACCCTGGCTTGCCAAACCCTCGTGTTAAATCATCTAAGATAGCGAAAAGAAACAAGTGGAGACCCGAAGAGGTCAAGAAGATGATTAAAGTGCGTGGGGAGCTTCATAATCGATTCCAAGTTCTTAAAGGACGGATGGCTCTCTGGGAAGAGATATCGGCAAATTTGTTGGCAGATGGAATCAGTAGAAGTCCTGGACAATGTAAATCTCTTTGGACATCCCTTGTTCAGAAATATGAGGAAAGCAAGAGTGATAAACAAAAGCAATCGAGCTGGCCATATTTTGAGGATTTAGACAAAATTTTATCAAGCTTGGAATCAAGTAGTTCCAAATGA
Protein Sequence:
- >SMil_00013349-RA_Salv|Salvia_miltiorrhiza|Trihelix|SMil_00013349-RA_Salv
MAALSTISLCPHKLFWCQPKPRRRFISCCVSVPSVKGIRGSKVPNRRFGRREGAGKSMEDSVKRKMEQFYEGSDGPPLRILPIGGLGEIGMNCMLVGNYDRYILIDAGIMFPDYDDLGIQKIIPDTTFIKKWSHKIEAVVITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIKKRLKEFGIFLPSRLKVFNTRRRFVAGPFEVEPIRVTHSIPDCCGLVFRCADGTILHTGDWKIDESPLDGNVFDREALEELSKEGVTLMMSDSTNVLSPGRTLSETVVADSLLRHISAAKGRVVTTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLASHGSSHSLKLNKEDLILYSAKVIPGNETRVMKMMNRLAEIGPQIVMGKNELLHTSGHAHREELDEVLKIVKPQHFLPIHGELLFLKEHELLGRSTGVRHTTVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLMYSDGDKAFGTATELCIDERMRIASDGIIVVSMEIMRPDGSVEKTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVTCPLAHMERIVSEVLRKMVRKYSSKRPEVIAIAIENPAGVLADEINEKLSGKSHISSEFSALRKAVDRHEKRKQPIARLEEDVNGLALERSTSAQELEDQDFDEVQGEMAASTSGLPDRALKTNEPDVFWKSFVSSSEPIQSEHNVELLPAAEHKEKGKEEGSKVDPGLPNPRVKSSKIAKRNKWRPEEVKKMIKVRGELHNRFQVLKGRMALWEEISANLLADGISRSPGQCKSLWTSLVQKYEESKSDKQKQSSWPYFEDLDKILSSLESSSSK