Information report for Sevir.9G191300.2.p
Gene Details
|
|
Functional Annotation
- Refseq: XP_012698336.1 — LOW QUALITY PROTEIN: trihelix transcription factor GTL1
- TrEMBL: A0A2S3IKR8 — A0A2S3IKR8_9POAL; Uncharacterized protein
- STRING: OPUNC10G14260.1 — (Oryza punctata)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Sequences
CDS Sequence:
- >Sevir.9G191300.2.p|Setaria_viridis|Trihelix|Sevir.9G191300.2.p
ATGCAGCAGCAGCAGCACGGGGGAGGGGGAGGAGGAGGAGGAGGCGGCGGCGGTGGAGGTCCGGCGCAACAGTTCGGCGCGCAGCAGGTGGAGATGCCGCCGCCATTCTCGCCGGCCGGCGGCGCCGGGCAGCGGATCTCGCTGGCCGAGGCGCCGTCACCCATCAGCAGCCGGCCGCCTGCGCCGGCGCAGCAGCAGTACGACGAGCTCGGCGTATCCAGCGCCGGCGCCGGGGGCTTCGACGCCGAGGGCCTGGCGGCCGCTGCCGCCGGCGAGGAGGGCGCCAGCGGCGGCTCCGCGGGCAACCGGTGGCCGCGGCAGGAGACGCTGGAGCTGCTCAAGATCCGGTCGGAGATGGACGCCGCCTTCCGGGACGCCACCCTCAAGGGCCCCCTCTGGGAGCAGGTCTCTAGGAAGCTGGCCGAGAAGGGGTACACCCGGAGCGCCAAGAAGTGCAAGGAGAAGTTCGAGAACGTGCACAAGTACTACAAGCGCACCAAGGAGAGCCGCGCCGGCCGGAACGACGGCAAGACGTACCGCTTCTTCACGCAGCTCGAGGCGCTGCACGGCACCGGCGGGGCGGCGCAGGCGGCGTCGTTCGTGCCCCCGGCGACCTCTGTCGGGTTGTCGTCCTCCGGCGCGGCGAGGCCCTCGGCCCTGCGCGTGCCTGCCGAGCCGCCGCCTGCCGTGGCGATCGGCGGCGCGGGGATGCCGATGGCCCTGGGCAACCAGATGAGCTTCTCGACGTCCAACACGGAGGATTACTCCGATGAGGAGGACTCAGACGACGAGGGCACCCAGGAACTGGGCGGCGGCGCGGACGAGCGGGGCAAGAGGAAGAGGGTGTCGGAGGGCGGCGCCGCCGCCGGCGGGAGCGGCAGCGGCAGCGGCAGCGGGAAGATGATGCGGTTCTTCGAGGGCCTGATGAAGCAGGTGATGGAGCGGCAGGAGGCGATGCAGCAGCGGTTCTTGGAGGCCATCGAGAAGCGCGAGCAGGACCGCATGATCCGGGAGGAGGCGTGGCGGCGGCAGGAGATGACGCGGCTCGCGCGCGAGCAGGAGATCCTCGCGCAGGAGCGGGCCATGGCTGCCTCCCGCGACGCCGCCGTGCTCTCCTTCATCCAGAAGATCACCGGGCAGACCATCCCGATGCCGTCCATCGCTGCGCCCACCATCAACGCCATGCCGCCGCCGTCGCATCCGAGGCCACCGCCGCCCCAGCCGCACCCCACGCCCATCGCCTCCGCCTCGCCAGCAGCCACGCCGGCGCCGGCGCAGCCACCAGCCTCGCAGCCTCCGCCCGCGCAACAACCACAGCCCTCGCTGCCGCCGCAGAGGTCGCCAATGCCGGCCACGCCGCAAACGCCAGCACCACCGCAGCAGCAAAGCACGGACATTGTCATGACGCCGGCCGAGACGGCGGCGCATGCCGATACCCCCGGTTACGACGGGTCCGGCGGCGGCGCGACGTCGTCCCGGTGGCCCAAGGCGGAGGTGCACGCGCTGATCCAGCTGCGGAGCAACCTGGACACGCGGTACCAGGAGGCCGGGCCCAAGGGGCCCCTCTGGGAGGAGATCTCCGCCGGCATGCGGCGGCTGGGCTACAACCGGAACGCGAAGCGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAGGTGAAGGAGAGCAACAAGAAGCGGCCCGAGGACTCCAAGACGTGCCCCTACTTCCACCAGCTCGACGCGCTCTACCGCAACAAGGCGGCGCTCAGCTCCTCCGGCGCCGGCGCCGGACCAGCCGCCGTGCACGCCAGCAGCGCACCGTCGACACAGGCGCCGGAGACGGTCAAGGTGACGGCCGCGGCGCCCATCTCACAGACTCCGCCGCCGCCGACACTGCCTTCCCAGTCGTCCCAGCACGCGGCCAAGAACGGCGGCGGCAGCAACGCCGCTGCTGGCAGCGGCAACGGCAACGGCGGCGGCGCGTCGGAGCACGGCGCCAGCGGAGGCGGCTCCGGGGGCATGCAAGCGCAGGCGAGCAACGGCAGCGTTGCGGCCAGCAGGTTCTTCGGAGATGGCGGCGGCGGCGGCTCGGCCTCGGCGGCGAAGAAGCCAGAGGACATCATGAAGGAGATGATGGAGCAGAGGCCGCAGCCGCAGGCGGTGGTCAGCGGCTACAACAGAATCGACGGCGCGGACAGCGACAACATAGACGAGGATGAGGACGACTACGACGACGATGACGACGACGAAGACGACGTCGACGGCAACAAAATGCAGTACGAGATCCAGTTCCAGCAGCGGCAGCACCATCACCACCACCACCAACAGCCGCAGCAGCAGCACCAGAACGTGGTCAGGCCGAACGCCGGCGGCGGCGGCGCCGGCAATCCGCCCGGCACCACCGCTCCCAGCACGGCCGCGGCCGCGACAACAACAGCCGGATCTTTCTTGGGCATGGTCCAGTGA
Protein Sequence:
- >Sevir.9G191300.2.p|Setaria_viridis|Trihelix|Sevir.9G191300.2.p
MQQQQHGGGGGGGGGGGGGGPAQQFGAQQVEMPPPFSPAGGAGQRISLAEAPSPISSRPPAPAQQQYDELGVSSAGAGGFDAEGLAAAAAGEEGASGGSAGNRWPRQETLELLKIRSEMDAAFRDATLKGPLWEQVSRKLAEKGYTRSAKKCKEKFENVHKYYKRTKESRAGRNDGKTYRFFTQLEALHGTGGAAQAASFVPPATSVGLSSSGAARPSALRVPAEPPPAVAIGGAGMPMALGNQMSFSTSNTEDYSDEEDSDDEGTQELGGGADERGKRKRVSEGGAAAGGSGSGSGSGKMMRFFEGLMKQVMERQEAMQQRFLEAIEKREQDRMIREEAWRRQEMTRLAREQEILAQERAMAASRDAAVLSFIQKITGQTIPMPSIAAPTINAMPPPSHPRPPPPQPHPTPIASASPAATPAPAQPPASQPPPAQQPQPSLPPQRSPMPATPQTPAPPQQQSTDIVMTPAETAAHADTPGYDGSGGGATSSRWPKAEVHALIQLRSNLDTRYQEAGPKGPLWEEISAGMRRLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYRNKAALSSSGAGAGPAAVHASSAPSTQAPETVKVTAAAPISQTPPPPTLPSQSSQHAAKNGGGSNAAAGSGNGNGGGASEHGASGGGSGGMQAQASNGSVAASRFFGDGGGGGSASAAKKPEDIMKEMMEQRPQPQAVVSGYNRIDGADSDNIDEDEDDYDDDDDDEDDVDGNKMQYEIQFQQRQHHHHHHQQPQQQHQNVVRPNAGGGGAGNPPGTTAPSTAAAATTTAGSFLGMVQ*