Information report for Sevir.7G194500.1.p
Gene Details
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Functional Annotation
- Refseq: NP_001344790.1 — uncharacterized LOC100279868 isoform 2
- TrEMBL: A0A3L6PWB5 — A0A3L6PWB5_PANMI; Uncharacterized protein
- STRING: Si012121m — (Setaria italica)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Sequences
CDS Sequence:
- >Sevir.7G194500.1.p|Setaria_viridis|Trihelix|Sevir.7G194500.1.p
ATGCAGCAGCAGCAGCACCAGGACGGAGGCGGGTCCCAGTACGGGGCTGCGCCACCGGACATGGGCCCCTTCTCGCCGCCGGCGGCTTCCGGCCCCATGCCGCTGAGCAGCAGGCCCCCGTCGGCGACGCAGCCGCCGCCCCAGCAGCAGCAGCAGCAGCCGAGGGTGACCTACGAAGAATTGGCCGCGGTGTCGGGGGCCGGTGCCGGCGGCTTCGACGACGAGATGCTGGGCGGAAGCGGCGGCGGCGGGTCGTCGGGCGCGTCCAGCAACCGGTGGCCACGGGAGGAGACGCAGGCGCTCATCAGGATCCGGTCGGAGATGGACGCCACCTTCCGCGACGCCACGCTCAAGGGCCCCCTCTGGGAGGACGTCTCCAGGAAGCTTGCGGATTTGGGCTACAAGAGGAGCGCCAAGAAGTGCAAGGAGAAGTTTGAGAACGTGCACAAGTACTACAAGCGCACCAAAGAAGGCCGCGCGGGGAGGCAGGACGGCAAGAGTTACCGATTCTTCGACGAGCTGGAGGCGCTGCATGCGGCCGCGCCGCAGCCGCAGCCACAGCAGCAGCTGCCGCCAGCAAGCAGCGCTCAGCCGCTGCACGCCTTCGCGGTGCCAGTATCCGCGCCGCCGCCTATGAGTTCAATGCCGCCGCCGCCGCCGGGGCCGATGCAGCCGGCGCCAATATCTTCGGCGGGCCCGGCTCCGGTTCCGGCTGCGGCGCCCATGGAGCTGCCCCCGGCCCAGCAGCCCCTCAACCTGCAAGGTCTGAGCTTCTCGTCCATGTCGGACTCGGAGTCGGACGACGAGTCCGAGGACGACGACATGACGGCGGAGACGGGCGGCAGCCAGGACCACCTCGGCAAGCGAAAGCGCGGTGGCGGCGCTGGCGGCAGCAAGAAGATGATGTCCTTCTTCGAGGGTCTCATGCAGCAGGTCGTCCAGAGGCAGGAGGAGATGCAGCACCGGTTCCTGGAGACCATGGAGAAGCGGGAGGCGGAGCGCACGGCGCGGGAGGAGGCGTGGCGCAGGCAGGAGGTCGCCCGCCTCAACCGCGAGCAGGAGCAGCTCGCTCAGGAGCGCGCCGCCGCGGCATCCCGGGACGCCGCCATCATAAACTTCCTCCAGCGCATCGGCGGCCAGTCCGTGCAGCCGCCTGCCGCCGTCGCCATCCCAATGCCAGTCCAGACCCCGCCACCGCCGAAGCAACCTCCTCGACAGCCGCAGCACCCACCTCCACCGTCGCCGCAGGCCACGACACCGCAGTCGAAGCCCATCTCAGCCGCGCCGCTCCAGCAGCAGCCTCAGGAAACGGCGGCGCACCGGGACGCTGGCACCCCGCGCAGCGCGCCCCCGACCTCCAGCGCGTCACTTGAGCTGGCGCCGCCAGTCACGACGGAGCAGCACGTCGATTCCGGTCTAGGTGGTGGAGACGGCGGGGCGGCGTCGTCCTCGCGGTGGCCGAAGACGGAGGTGCACGCGCTCATCCAGCTGCGCATGGACCTGGACATGCGCTACCAGGAGACGGGACCCAAGGGCCCGCTCTGGGAGGAGATTTCTTCCGGGATGCGGCGGCTGGGATACAACCGGAGCTCGAAGCGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTACTACAAGAAGGTGAAGGAGAGCAACAAGAAGCGGCCCGAGGACTCCAAGACCTGCCCATACTTCCACCAGCTCGAGGCCATCTACAACAGGAAGCACCTCCGCAGCATCGGAGCCGCCTCAGCGTCCAGTGTCGCCATCGCCGGCGCTCCTCCCGCCCTCCCTGCTGAGCAGGCGAACCCGACAAGGCAGGAATTAGAGGGGAAGAATATCAACGACGACAAGAGGAACAACGGAGGATCGGGCGCAGGCGCACAGGAGCCGAACAGCAATGGCGAGAAAGCGCCGGCGCCGCCGGCCGCGTTCGACGCTGACAGCGGCATGAAGAAGCCAGAAGACATCGTCAGGGAGCTGAACGAGCAGCCGCCCCGGGAATTCACGACGGACGAGACGGACAGCGACGAGATGGGCGATGAGTACACCGACGGTGAGGAGGGCGAGGACGACGGAAAAATGCAGTACAGGATACAGTTCCAGAGGCCGAACTCGGGCGGCACCAACAGCGCACCGCCGGCACCAGCACCAACGACGGCGGCCGCACCCGCGACCTCCGCTCCGACGAGCACCTTCCTCGCCGTGGTTCGATAG
Protein Sequence:
- >Sevir.7G194500.1.p|Setaria_viridis|Trihelix|Sevir.7G194500.1.p
MQQQQHQDGGGSQYGAAPPDMGPFSPPAASGPMPLSSRPPSATQPPPQQQQQQPRVTYEELAAVSGAGAGGFDDEMLGGSGGGGSSGASSNRWPREETQALIRIRSEMDATFRDATLKGPLWEDVSRKLADLGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKSYRFFDELEALHAAAPQPQPQQQLPPASSAQPLHAFAVPVSAPPPMSSMPPPPPGPMQPAPISSAGPAPVPAAAPMELPPAQQPLNLQGLSFSSMSDSESDDESEDDDMTAETGGSQDHLGKRKRGGGAGGSKKMMSFFEGLMQQVVQRQEEMQHRFLETMEKREAERTAREEAWRRQEVARLNREQEQLAQERAAAASRDAAIINFLQRIGGQSVQPPAAVAIPMPVQTPPPPKQPPRQPQHPPPPSPQATTPQSKPISAAPLQQQPQETAAHRDAGTPRSAPPTSSASLELAPPVTTEQHVDSGLGGGDGGAASSSRWPKTEVHALIQLRMDLDMRYQETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINKYYKKVKESNKKRPEDSKTCPYFHQLEAIYNRKHLRSIGAASASSVAIAGAPPALPAEQANPTRQELEGKNINDDKRNNGGSGAGAQEPNSNGEKAPAPPAAFDADSGMKKPEDIVRELNEQPPREFTTDETDSDEMGDEYTDGEEGEDDGKMQYRIQFQRPNSGGTNSAPPAPAPTTAAAPATSAPTSTFLAVVR*