Information report for PSME_00053904-RA
Gene Details
|
|
Functional Annotation
- Refseq: XP_024402443.1 — trihelix transcription factor GTL1-like
- TrEMBL: A0A0C9S8E9 — A0A0C9S8E9_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_4737_2607 transcribed RNA sequence
- STRING: PP1S19_341V6.1 — (Physcomitrella patens)
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Citrullus lanatus: Cla004965
- Fragaria vesca: mrna01828.1-v1.0-hybrid
- Gossypium hirsutum: Gh_A02G0934
- Juglans regia: WALNUT_00025256-RA
- Musa acuminata: GSMUA_Achr11P03520_001, GSMUA_Achr9P18800_001
- Panicum virgatum: Pavir.9KG561300.2.p
- Salvia miltiorrhiza: SMil_00007552-RA_Salv
Sequences
CDS Sequence:
- >PSME_00053904-RA|Pseudotsuga_menziesii|Trihelix|PSME_00053904-RA
ATGAAGGAGAAGGGAGAAGGCAGTGAAAGAATTCTTGAAGCCGGTAGACCCCAGCAGTTTGGTCTACCGCAACACCAGTCCGACTCAATGCTTCCTCAATTTCTCGCTTCTCTGACCAAAGAATCTCCTCATTTCCAGACTTCGGAACGATTTGAAAATGAGTCCAAAGAGTCCAGGGATCAAACCCCGCTCCCATCTACCACGGCACCCAAGAAGCCGAAGGACATTGGTGAATTTTCTTCTGATTTGCCCCACCTGGTTGCCTCGCCCATTTCCTGCAGGCCGCCTGCCGTGAGTGGGAGCGATGGCGTCTTTAAACAGGCGGTACACGACCCTGACGAGAACAACAACAACAATAACGCGGCGGACCTTGGCGACGATGACGCCTTTGGTGGATCCGGAGGCAGCCGATGGCCAAGGCAAGAAACCCTCGCCCTTCTCAAAATTCGATCAGAAATGGACGCCGTTTTTCGCGATGCATCTCTCAAAGCTCCTCTCTGGGACGAGGTTTCAAGGAACCTCGCGGAGTTAGGGTTTCATAGAAGTGCAAAAAAATGTAAAGAAAAATTCGAAAATGTGAACAAGTACTACAAGAGGACGAAGGCGGGAAGGTCTGGCCGACAAGACGGGAAAACCTACAAGTTCTTCAACCAGCTGGAGGCTTTATACGGCAACACCGACGACACCGCCATCGTGGACAATAACACAAGCAGAAACAACACTGTCATGGCCGCTTCTGGATCCAATCACGAGTTTCAGGCCACGCCCAGTCCTCCTCCCGCCGCTGTTGCTGCAAATAGATCGGAAGACACACAAGTTCCGGAAGAGATCAAACCTCCTGCTGCTGCAGAGCTGAGTCCGATGAGTTTTTCGACTGAGTCATCGGATGAAACGCATGACGATAATAATATTTCAGCTGATACTCGGAGAAGCAGAAAAAGAAAGCGGATTACGACCAAGAAAATGATGAGATTCGTCGAGAAACTGATGGAAAGAGTCATGGAGAAGCAAGAAATGATGCAACAGAGATTTCTTGAAATGATCGACAAACGCGAGCAGGAGAGAATGATCCGTGAAGAAGCCTGGAGGCGGCAAGAGATTGTCAGGTTGAGTAGAGAAAACGAACTAAGGTCGCAGGAACGAGCGCTCTCCGCTTCAAGAGATAGAACACTCGTTGCCTTTCTCCAAAAAGTTACAGGTCAGACAGTGGATCTTCCTGATCAGTTTCCCGTTTCGCAGCCTATCTCCCCAGCGCCCGCTCAGCAAATTAATCCTCGCCCGGAAGAGATCAGTAAAGATAATAACGAAACAGACAGCTTGGATCCAAACAGCAAGCGGTGGCCTAAGCAGGAAGTCCACGGTCTGATCAAAGTGAGGAGCGCACTGGAACCTAGGTTTCACGATTCTGGACCTAAAGCTCAGCTATGGGACCAAATCTCCGCAGAAATGGCAGCCATGGGATATCATCGCAGCGCCAAAAGATGCAAGGAAAAGTGGGAAAATATCAATAAGTATTTTAGAAAGACCAAAGAGAGTAACAGAGAACGCCCCGGGAATAACAATACTTGTCCATATTTCCACCAATTGGACTCACTGTACACCAAGGGGATTCTCGGATATTCAAATTCGGAAAAGCTCAACAGGACTCGAGACCAGGACCAACAGCAAGAGGAGCTCCTAGAGCAAACCACCTGCGGGAGCAGCAGAGACGATCAGAGTCCCGGCCATGACGGCGACAACGAAATCCTGGCCATCATGCCGCCGCCATCCATCACCACCGCTCAGCCTCCATCTAATTTTTTCTCTGCAGTTCAACCAGAAAATCACGTCAATGGCGGCCAAACAGGGTCTCCAACGAAGGCCATGCTTTCTTCGGTTTCGGAAGGATTATTAGGAAATAGCACTTCCAAGCCAGATTCAACGACTATCATGATGTTTCAAACCTGTTCTCAATCAGCTCCGACGCTTTCGACAACCATAACAGTTGAAGATGGTAAGAACAAGCTCGAGAAACAGGCGGATCTGGATTTACCTTACGGTGTTTATGATGACAGGGCGGGTAATTCGGCCTCCAATGTACCTAGAGATTCTTCTGCGGCATTCATGGGCGCAATGGTCGTCGATCCGCCACAGTTCCACATGCCTAAA
Protein Sequence:
- >PSME_00053904-RA|Pseudotsuga_menziesii|Trihelix|PSME_00053904-RA
MKEKGEGSERILEAGRPQQFGLPQHQSDSMLPQFLASLTKESPHFQTSERFENESKESRDQTPLPSTTAPKKPKDIGEFSSDLPHLVASPISCRPPAVSGSDGVFKQAVHDPDENNNNNNAADLGDDDAFGGSGGSRWPRQETLALLKIRSEMDAVFRDASLKAPLWDEVSRNLAELGFHRSAKKCKEKFENVNKYYKRTKAGRSGRQDGKTYKFFNQLEALYGNTDDTAIVDNNTSRNNTVMAASGSNHEFQATPSPPPAAVAANRSEDTQVPEEIKPPAAAELSPMSFSTESSDETHDDNNISADTRRSRKRKRITTKKMMRFVEKLMERVMEKQEMMQQRFLEMIDKREQERMIREEAWRRQEIVRLSRENELRSQERALSASRDRTLVAFLQKVTGQTVDLPDQFPVSQPISPAPAQQINPRPEEISKDNNETDSLDPNSKRWPKQEVHGLIKVRSALEPRFHDSGPKAQLWDQISAEMAAMGYHRSAKRCKEKWENINKYFRKTKESNRERPGNNNTCPYFHQLDSLYTKGILGYSNSEKLNRTRDQDQQQEELLEQTTCGSSRDDQSPGHDGDNEILAIMPPPSITTAQPPSNFFSAVQPENHVNGGQTGSPTKAMLSSVSEGLLGNSTSKPDSTTIMMFQTCSQSAPTLSTTITVEDGKNKLEKQADLDLPYGVYDDRAGNSASNVPRDSSAAFMGAMVVDPPQFHMPK