Information report for PSME_00021858-RA
Gene Details
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Functional Annotation
- TrEMBL: A0A0C9SB35 — A0A0C9SB35_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_928_1942 transcribed RNA sequence
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Beta vulgaris: Bv2_041790_ncxt.t1
- Brassica napus: GSBRNA2T00016746001
- Glycine max: Glyma.13G195800.1.p, Glyma.04G135400.1.p
- Gossypium hirsutum: Gh_A05G3466
- Musa acuminata: GSMUA_Achr9P22780_001, GSMUA_Achr4P05890_001
- Petunia inflata: Peinf101Scf00506g18023.1
- Populus trichocarpa: Potri.001G028400.1
- Sesamum indicum: XP_011091850.1
- Solanum tuberosum: PGSC0003DMP400009571, PGSC0003DMP400009570
Sequences
CDS Sequence:
- >PSME_00021858-RA|Pseudotsuga_menziesii|Trihelix|PSME_00021858-RA
ATGGTAATGGCAAAGGGCAGGGGCAGGGGCAGTGGCAGTCCTAATCATGCGGGTCGGTCAGTCACCGATTTGCATCATACTCCACTAAACACAACTCAGCAACATTGTTTTGGTATCATCTCCAACAGGGCAGAAGAACAGGCAGACCGCGTACCACCCGCCGGTGCCACGGATAGCCGTAAGGGTTCGTGGCCCCGCATCTCCCACCGAATTCGCGCTGAAGGGTCCCGCAGGGGAAGCTACTTGCCCACGGTCCTGGTCATCCGCCAGCGGTTTCTCGGACAAACGGGAGTCGGGGATGAATTTTGTCATTTAACCGGGTCCGGGTCCGGGTGGAGTAAGGAAGCAAGGAACATCGACCCACCGATCGAGAACGGCGCGCAGTGCAGTCAACTAGACGGGACGGGACGGGCCGGGTTGGCTGAGCTCGGTTACTCTCTTAGGCGCGGTCGACGTTGCTATCCGGGAGACTGTAGCGCACGCTTTTTCTTGTCTCCGTGCCTCGTCCTCGTCCTCGTCCTCGTCCTGTTGCTGCGACGTCGACCGCGCTGCTGTGCTTTTTTAATTTCTCATCCCCCTCCCCGCCTCTCCTCATACAAGCTAGCAAAGGCCCCCCCCTCCCCTCCCCGTCTATGTTCCGACTGCGTACAGGTGAGGTCCCATGGGGAAGAAGACGCGTACAGAAAGGAAGTCTTAACGCTGCCTGCAAACGGGAAGGGAAGCGGCAGCAGTTGGGGGACGATGGGCAAGCTTGATTCTTTGGAGAAGCCGCTCCAGAGACCGGGAGGAAGCAGTAATAATAATAACAATAACAATGCAAACGGGGATGTGCTAACGTTGTCGAAGACGCCGGAGCGGGTGAAGCGAGACGAGTGGAGCGAGGGCGCGGTGACGACGCTGCTGGACGCCTACGAGTCGAAATGGTTGCTGCGGAACCGGGCAAAGCTCAAGGGGAACGACTGGGAGGATGTCGCCCGCCATGTCTCCACGCGAGCCAATGGCACCAAGTCCACCAAGACGCAGACCCAGTGCAAGAACAAGATCGAGTCTATGAAGAAACGTTACAGAGCCGAGGCTGCCACCTTAAATGGCAGCAATAGCAACGCCAACGGCTCTTCCTGGCCGCTTTACTCCCGTTTGGATGGCCTGCTCCGTTGTCGAACAGCTGCTGCTGCCGCAGGCGACGCCAACCCGATTCCGTGTGCGAACGCGATTGGAAATCCTCCCCCTGATTTGGCATTGCTGGAGTCTCCAACTCCACCTCCACCTCCGCCTCCACTTCCTCCTCCGCCTCCCGTGGAGGAGCGTGAAGGGCAGGCGGAGGGGCAGGGTCAAGGACAAGGCCAAGGCCAAGGCCAAGGCCACGGACAAGGGCAAGAACAAGGGCAAGGGCAAGCGCAAGCGCAGAAGCAGGAGGAGGTGGATTTGGTCCGGGTGGCACCGGCGGCGCAGGATAGCAACCAAGCAGACGACGGATCAAACACGCTCCCCAATCGGAAGGAGAGCGCAGCGCTGGACACCGACACCAGCACGCCCCGCAGCAAGATCGCCCACGCGCCCTGCGACGGCTCAGGGAAGGGCGTGGCTAATAATTACTCGTCCAAGCGCCGCAAGAGCTCTGGCGGCGGCGGTGGAGGCGGAGGCAGCAGCGAAGTGGCCGAGAGCATCCGATCCTTTGCGGATTCCATCGTGAAGCTGGAGCAGGCCAAGATGAGACTATACAAGGATTCCGAGCGTCTCCGGGCAGAGACAGAGGTCCGGCGGGGCGAGATGGAGCTGAAGCGGACGGAGATTATTGCTAAGACACAGCTGCAGATCGCCAGGCTTCTGTCGGGGAAAAACGGTAAGCGAAAACTCACAGATAGGAATACGATTACGAATACGTCGTCCACGACACTCGCCCTCACTACTGCTCCACTTCCCCCTGACGCCGCTGCTCACGCGCCCCCTCCTCGCTCTCTCCTTGGGAAGTTTTCTGAATGGATTGACCTAGATTCTTGTGGATTGGGCTTCATATGGAGACTCTCACCAAAATCACATCTTGACTCTTACAGAGTAGCATCTGAAGTTCAGATTCAGGTCAAGGAGTTGACTGTTCACCCATTGTTGGAATTTTTGGGAGCAGATCAGAACTTCTATCGTCAATGCTTGGGTTCCTGTACCATTGTTGAAAGACAGAATGGTTAA
Protein Sequence:
- >PSME_00021858-RA|Pseudotsuga_menziesii|Trihelix|PSME_00021858-RA
MVMAKGRGRGSGSPNHAGRSVTDLHHTPLNTTQQHCFGIISNRAEEQADRVPPAGATDSRKGSWPRISHRIRAEGSRRGSYLPTVLVIRQRFLGQTGVGDEFCHLTGSGSGWSKEARNIDPPIENGAQCSQLDGTGRAGLAELGYSLRRGRRCYPGDCSARFFLSPCLVLVLVLVLLLRRRPRCCAFLISHPPPRLSSYKLAKAPPSPPRLCSDCVQVRSHGEEDAYRKEVLTLPANGKGSGSSWGTMGKLDSLEKPLQRPGGSSNNNNNNNANGDVLTLSKTPERVKRDEWSEGAVTTLLDAYESKWLLRNRAKLKGNDWEDVARHVSTRANGTKSTKTQTQCKNKIESMKKRYRAEAATLNGSNSNANGSSWPLYSRLDGLLRCRTAAAAAGDANPIPCANAIGNPPPDLALLESPTPPPPPPPLPPPPPVEEREGQAEGQGQGQGQGQGQGHGQGQEQGQGQAQAQKQEEVDLVRVAPAAQDSNQADDGSNTLPNRKESAALDTDTSTPRSKIAHAPCDGSGKGVANNYSSKRRKSSGGGGGGGGSSEVAESIRSFADSIVKLEQAKMRLYKDSERLRAETEVRRGEMELKRTEIIAKTQLQIARLLSGKNGKRKLTDRNTITNTSSTTLALTTAPLPPDAAAHAPPPRSLLGKFSEWIDLDSCGLGFIWRLSPKSHLDSYRVASEVQIQVKELTVHPLLEFLGADQNFYRQCLGSCTIVERQNG