Information report for Potri.015G093600.1
Gene Details
|
|
Functional Annotation
- Refseq: XP_002321691.2 — uncharacterized protein LOC7463114
- Swissprot: Q84W56 — RNJ_ARATH; Ribonuclease J
- TrEMBL: B9IF88 — B9IF88_POPTR; Uncharacterized protein
- STRING: POPTR_0015s10570.1 — (Populus trichocarpa)
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Sequences
CDS Sequence:
- >Potri.015G093600.1|Populus_trichocarpa|Trihelix|Potri.015G093600.1
ATGGCCGCTGCTTTCAGTGCTCTCTCCATCTCTCCGTACACTCTCGTATGCCGCCATAACTCTACCAAACATTCCATTTCCTGCTCTACTGCCTCTCCTACTACCACTACTATAGGCAGTAGAGGAACGAAAGCGCCGCCGCGGCATAAGAGGAGTGAAAGAATGGAAGGGGCAGGGAAAAGTATGGAAGATTCGGTGAAAAGAAAAATGGAGCAGTTCTATGAAGGGTCTGATGGTCCGCCGTTGCGAATTGTTCCAATTGGTGGCTTGGGTGAGATTGGGATGAATTGTATGCTTGTTGGGAATTTCGATCGATATATTTTAATTGATGCCGGTGTTATGTTTCCTGATTATGATGAGCTTGGAGTGCAAAAGATTATACCTGATACCACATTTATCAGAAGATGGAGACACAAAATTGAAGCAGTTATTATAACACATGGTCATGAAGATCACATTGGCGCGTTGCCTTGGGTTATTCCAGCTTTGGATCATCACACTCCAATTTATGCATCATCCTTTACAATGGAGCTCATCAAGAAACGTTTAAAGGAGAATGGGATCTTTGTTCCATCAAGACTTAAGGTGTTTAAAACGAAGAGGAAATTTGCAGCTGGGCCTTTTGAAATAGAGCCTATCAGGGTGACCCATTCTATTCCAGATTGTTGTGGACTGGTCCTTCGCTGTGCTGATGGTACAATTCTTCACACTGGGGACTGGAAGATTGATGAGTCACCATTGGATGGAAAAAAATTTGATCGTGAAACTTTAGAGGAACTCTCAAAAGAAGGAGTTACATTGATGATGAGTGACTCAACAAATATACTGTCACCTGGAAGGACAATTAGTGAAAGTGTGGTAGCTGATGCATTATTGAGACGTATTTCAGCTGCTAAAGGAAGGATTATCACTACTCAATTTGCATCAAATATACACCGTCTTGGAAGTGTGAAAGCAGCTGCTGATTTGACCGGTAGAAAGATGGTCTTCGTTGGCATGTCATTGAGGACATATTTGGATGCGGCGTGGAAGGATGGAAAGGCACCGATTGATCCATCCACTCTGGTTAAAGTGGAAGATATTGATGCTTATGCCCCAAAGGATCTGCTAATTGTCACAACTGGATCACAAGCAGAGCCGCGTGCAGCACTCAATCTTGCGTCATATGGAAGCAGTCATGCCTTAAAACTGAACAAGGAAGATGTTATTCTATATTCAGCTAAGGTAATCCCTGGCAATGAATCTAGGGTAATGAAAATGATGAATCGCATATCAGAGATTGGCTCAACTATAGTAATTGGTAAGAATGAGCTGCTTCACACGTCTGGTCATGGGTATCGTGGAGAACTGGAGGAAGTGCTTAAAATTGTGAAGCCACAACATTTTCTTCCCATACATGGAGAACTTTTGTTTTTGAAAGAACATGAACTGCTTGGGAAATCAACTGGCATTCAGCACACTACCGTTATCAAGAACGGAGAGATGCTTGGGGTTTCTCACTTGAGGAACAGAAGAGTTCTATCCAATGGTTTTGTCTTCCTTGGGAAGGAAAATTTGCAGTTGATGTACAATGATGGGGATAAGGCATTTGGCACATCAACTGAGCTTTGTGTTGATGAGAGAATGAGAATTGCAACAGATGGTATTGTAGTGGTCAGCATGGAAATTTTACGCCCTCAAAATGCAGATGGGCTAGTTGAAAATAGCTTAAAAGGAAAAATTAAAATCACAACACGCTGCCTATGGCTGGACAAAGGGAAGCTTTTGGATGCACTCCACAAAGCTGCCCATGCTGCACTTTCAAGCTGTCCAGTGAATTGTCCTTTAGCTCACATGGAAAGAACAGTATCTGAGGTGTTGAGAAAGATGGTAAGGAAGTATAGTGGTAAAAGGCCAGAAGTCATTGCCGTTGCCATGGAGAACCCAGCGGCTGTTCTTTCTGATGAACTCAATGCAAAGTTATCTGGCAATTCACATGTTGGCCTTGGCATATCAGCATTGAGAAAAATGGCTGACGGGCATAAAAAAAAAATTCGGGTGGACAGGAAGCAACCTGATGGAAATGGCTATGCAAATTTAGAGAAAACATCAACACAAAATTCAGAAGTTGATGGTTTTGAATTTGAAAGAGAGCTATCTAAAGAAGAGGAGACTTCTTCAAGTCCTAGCTTAGCTGAAGGACATTCCTCCGACTCTGAGAATCAAGATGATTTCAGGAAATCATTCATTCCACCATCCCCAGTCAATGAATTGGTAAAAAGTGATGAAGACTTGGTTCCACCATGGGAGCATGTAAATGAGCTCAAGGAAGATGGTACCATAAGCAGTGATGATGACTCGTTGGAAAATCAAAATTCTAGATCGAAGGGTTCCAGACCTGTAAAACGGAACAAATGGAAACCTGAGGAGGTTAAGAGTCTTATTAAAATGCGTGGGGAATTACATAGTAGATTTCAAGTTGTAAGAGGTAGAATGGCTCTGTGGGAAGAGATATCTACTAACTTGATGGCTGATGGGATCAATCATAGTCCAGGACAGTGCAAATATTTATGGACATCTCTTGCTAAAAAATATGAGGAAAGCAAGAGTGACAAGAAAAGCCAAAAAAGTTGGTCCTATTTCGAAGACATGGATAATATTTTATCTGATTCAGAGACAATGGCAACAAAATGA
Protein Sequence:
- >Potri.015G093600.1|Populus_trichocarpa|Trihelix|Potri.015G093600.1
MAAAFSALSISPYTLVCRHNSTKHSISCSTASPTTTTIGSRGTKAPPRHKRSERMEGAGKSMEDSVKRKMEQFYEGSDGPPLRIVPIGGLGEIGMNCMLVGNFDRYILIDAGVMFPDYDELGVQKIIPDTTFIRRWRHKIEAVIITHGHEDHIGALPWVIPALDHHTPIYASSFTMELIKKRLKENGIFVPSRLKVFKTKRKFAAGPFEIEPIRVTHSIPDCCGLVLRCADGTILHTGDWKIDESPLDGKKFDRETLEELSKEGVTLMMSDSTNILSPGRTISESVVADALLRRISAAKGRIITTQFASNIHRLGSVKAAADLTGRKMVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHALKLNKEDVILYSAKVIPGNESRVMKMMNRISEIGSTIVIGKNELLHTSGHGYRGELEEVLKIVKPQHFLPIHGELLFLKEHELLGKSTGIQHTTVIKNGEMLGVSHLRNRRVLSNGFVFLGKENLQLMYNDGDKAFGTSTELCVDERMRIATDGIVVVSMEILRPQNADGLVENSLKGKIKITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLAHMERTVSEVLRKMVRKYSGKRPEVIAVAMENPAAVLSDELNAKLSGNSHVGLGISALRKMADGHKKKIRVDRKQPDGNGYANLEKTSTQNSEVDGFEFERELSKEEETSSSPSLAEGHSSDSENQDDFRKSFIPPSPVNELVKSDEDLVPPWEHVNELKEDGTISSDDDSLENQNSRSKGSRPVKRNKWKPEEVKSLIKMRGELHSRFQVVRGRMALWEEISTNLMADGINHSPGQCKYLWTSLAKKYEESKSDKKSQKSWSYFEDMDNILSDSETMATK*