Information report for PGSC0003DMP400004864
Gene Details
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Functional Annotation
- Refseq: XP_006341153.1 — PREDICTED: trihelix transcription factor PTL-like
- Swissprot: Q9LZS0 — PTL_ARATH; Trihelix transcription factor PTL
- TrEMBL: M0ZSB1 — M0ZSB1_SOLTU; Uncharacterized protein
- STRING: PGSC0003DMT400007016 — (Solanum tuberosum)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0009909 — Biological Process — regulation of flower development
- GO:0010200 — Biological Process — response to chitin
- GO:0046621 — Biological Process — negative regulation of organ growth
- GO:0048442 — Biological Process — sepal development
- GO:0048498 — Biological Process — establishment of petal orientation
- GO:0090428 — Biological Process — perianth development
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
- GO:0042803 — Molecular Function — protein homodimerization activity
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Cajanus cajan: C.cajan_10032
- Capsicum annuum: CA09g01270
- Glycine max: Glyma.03G191700.1.p
- Gossypium arboreum: Cotton_A_36213_BGI-A2_v1.0, Cotton_A_36212_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A01G1153
- Manihot esculenta: Manes.08G021500.1.p, Manes.07G000300.1.p
- Nicotiana benthamiana: Niben101Scf31474g00003.1, Niben101Scf03580g01005.1
- Nicotiana tabacum: XP_016508166.1, XP_016439050.1
- Petunia inflata: Peinf101Scf00251g06012.1
- Sesamum indicum: XP_011101506.1
- Solanum lycopersicum: Solyc09g009250.2.1
- Solanum melongena: Sme2.5_04736.1_g00006.1
- Vitis vinifera: GSVIVT01033792001
- Ziziphus jujuba: XP_015901979.1
Sequences
CDS Sequence:
- >PGSC0003DMP400004864|Solanum_tuberosum|Trihelix|PGSC0003DMP400004864
ATGGAAGATCAGTATGGAATGGCAGATCTAAGACAATACATGAATGGTGGGCGTTCGATTTTCGGTTCGATCCAACAAGTACCACCAGAGCTGTTACCTGCTACTTCTCACCAGCAACAACAACAACACAGGAATCTTGGGCCGGGCCATCACCAGTATGAGATGGTGATGGGACTGGCCCAAGTTCCTTCGTCTTCATCTGGTCACGGGCTTACTACTCCACATCACCACCACCAACATGAGTTCCTTACGGACTCGAGTACTCCTGTAGCTGTAGCTGCTACAGCTATAGGAACTACTACTACGAGTGCCGGATTTAGTGGAATGGATCAGATGGAGATTGGTGGTGGTGGTGGTGGAGACGGAAGTGGACGGTGGCCGAGACAAGAGACACTTACACTACTTGAAATCAGATCAAGATTGGATTCAAAGTTCAAAGAAGCTAATCAAAAAGGACCCTTATGGGATGAAGTTTCAAGGATTATGTCTGAGGAACATGGATACCAAAGGACTGGAAAGAAATGTAGAGAGAAATTTGAGAACTTGTACAAGTACTACAAGAAAACTAAAGAGGGTAAAGCTGGAAGACAAGATGGAAAACACTATCGATTTTTTCGACAACTTGAAGCTTTATATGGTGAAACAAGCAATAATATTTCATCTACCTCAACGGAAGTTCTTCATCAGGGAAGTCATTTTCCTTATAATTCCGTTAATAACAACATGAATCAAGATCCTCATAATTTTCACCACGTCCATCAAGGTCCTAAGATATCCGATAGCATAAGTCTATCTAATTCATCTGAATTCAATACGACTTCCTCAGATGATAGTGATCAAGAGAAGAAGAAGAAGAGGAGGGGGAAGAGGAGTTTAAAGGCGAAGATAAAAGATTTCATTGATGGACAAATGAGAAAGTTGATGGAGAAACAAGAAGAATGGTTGGAGAAAATGATGAAAATGATTGAACATAAAGAACAAGAGAGGATATTGAGAGAAGAAGAATGGAGGAATCAAGAGACGATTCGTATGGAAAGGGAACATAAATTTTGGGCTAATGAGAGGGCATGGATAGAAACGCGCGATGCTGCTTTGATGGAGGCTGTGAATAAGCTAAGTGGTAAAGATTTGAAGAGTACTCTTGATGAAGAAATGGTTGATAATAGAAGAGGAGATGTGAGAGACAGTCTAAAAGATGATGATGTTGACCAGCACTGGCCTGATAGTGAAATAACTAGGTTAATACAACTTAGGACTAGCATGGAATCAAGATATCAACAATTGGGAATTTCATCATCAATAGATGATCATGATAATGATCATGATCATGTATTATGGGAAGAGATTAGTGAAAAAATGGCTATTTTGGGATATGAAAAAAGTGCTACAATGTGCAAGAAAAGATGGGGTAGCATCAATAGTTACCTAATGAAGTGCAACAAGAAAAGAAAAGAACAAAATTCAACAAGTTTGTTATGTTACAATGGTAATGTACAAATCAACAATCAATATTATGAAGCTGATGGATCATCATGTTTTAGGTACTTAATGGGAGATCATCATCAAAACTTATGGGAAAATTATGAATTGAAATTAAGCAAAGGTGGTGATGGTGGTGGAAATAATTGA
Protein Sequence:
- >PGSC0003DMP400004864|Solanum_tuberosum|Trihelix|PGSC0003DMP400004864
MEDQYGMADLRQYMNGGRSIFGSIQQVPPELLPATSHQQQQQHRNLGPGHHQYEMVMGLAQVPSSSSGHGLTTPHHHHQHEFLTDSSTPVAVAATAIGTTTTSAGFSGMDQMEIGGGGGGDGSGRWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMSEEHGYQRTGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGETSNNISSTSTEVLHQGSHFPYNSVNNNMNQDPHNFHHVHQGPKISDSISLSNSSEFNTTSSDDSDQEKKKKRRGKRSLKAKIKDFIDGQMRKLMEKQEEWLEKMMKMIEHKEQERILREEEWRNQETIRMEREHKFWANERAWIETRDAALMEAVNKLSGKDLKSTLDEEMVDNRRGDVRDSLKDDDVDQHWPDSEITRLIQLRTSMESRYQQLGISSSIDDHDNDHDHVLWEEISEKMAILGYEKSATMCKKRWGSINSYLMKCNKKRKEQNSTSLLCYNGNVQINNQYYEADGSSCFRYLMGDHHQNLWENYELKLSKGGDGGGNN*