Information report for Peinf101Scf00635g07018.1
Gene Details
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Functional Annotation
- Refseq: XP_019227038.1 — PREDICTED: uncharacterized protein LOC109208380
- Swissprot: Q84W56 — RNJ_ARATH; Ribonuclease J
- TrEMBL: A0A314KRF7 — A0A314KRF7_NICAT; Uncharacterized protein (Fragment)
- STRING: XP_009774848.1 — (Nicotiana sylvestris)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Sequences
CDS Sequence:
- >Peinf101Scf00635g07018.1|Petunia_inflata|Trihelix|Peinf101Scf00635g07018.1
TTATCATCTTCTGTCCTTTTAGGCATTCGTGGAACTAAAGGTCCTCATAAAAGACCTGCAAAAACTGAGGGGGCTGGAAGAAGTATTGATGACTCTGTACAACGAAGGATGGAACAATTCTACGAAGGGTCTGATGGCCCGCCTTTACGTGTTCTTCCTATTGGTGGTCTGGGAGAAATTGGGATGAATTGCATGCTTGTTGGAAATTATGATCGATATATTCTTATTGATGCAGGAGTAATGTTCCCAGGGTATGATGAGCTTGGTGTCCAGAAGATTATTCCTGATACAACTTTTATTAAAAAATGGAGTCACAAAATTGAAGCAGTCGTCATAACACATGGGCATGAAGATCACATCGGTGCGTTGCCTTGGGTAATTCCTGCACTGGATTCTCATACACCAATTTTTGCGTCATCATTCACAATGAAGCTAATTAAAAAACGATTGAAGGAGTTTGGGATCTTTGTTCCATCTAGGCTCAAGGAATTTAAAATAAGACGGAAATTTAGTGCTGGGCCCTTTGAGGTGGAATCTATCAGGGTTACCCATTCTATTCCTGATTGTAGTGGACTAGTTCTGCGCTGTGCTAACGGTACCATTCTCCACACAGGCGACTGGAAGATTGATGAGTCACCACTGGATGGGAAAGTTTTTGATCGTGAGGCCCTTGAGGAACTCTCAAAAGAGGGAGTTACTTTGATGATGAGTGATTCGACAAATGTCATTTCCCCTGGAAGAACACTCAGCGAAACTGTAGTTGCAGATTCATTGCTTAGACATATTTCAGCTGCCAAAGGAAGGGTTATTACTACTCAGTTTGCATCAAATATTCACCGTCTTGGTAGTGTTAAAGCTGCAGCTGATTTGACTGGTAGAAAGCTGGTTTTTGTCGGCATGTCGTTGAGAACATATCTTGAAGCTGCATGGAAAGATGGGAATGCACCAATTGATCCATCAACTCTGGTGAAAGTGGAAGATATTGATGCTTATGCCCCAAAAGATTTGCTGATAGTGACAACAGGCTCTCAAGCTGAAACACGTGCTGCGTTGAATCTTGCATCCTATGGAAGTAGTCATTTGCTCAAGTTGAACAAAGAAGATATTATATTGTATTCAGCCAAGGTGATTCCTGGTAATGATTCGCGGGTGATGAAAATGCTAAACCGTATATCAGATATAGGATCGACCATAGTGATGGGAAAGAATGAGCTGCTGCATACATCTGGCCATGCACATCGGGAGGAGCTGGAAGAAGTTCTGAGAATCGTGAAACCACAACATTTTCTTCCTATTCATGGTGAACTCTTGTTCCTGAAAGAGCATGAATTACTGGGGAGATCAACTGGCATTCATCACACAGCTGTTATCAAGAACGGAGAGATGCTTGGAATCTCCCATTTGAGGAACAGAAAGGTTCTATCCAATGGTTTCATTTCCCTAGGGAAAGAGAATTTTCAGTTGATGTATAGTGATGGTGACAAAGCATTTGGTACATCTGCTGAACTTTGTGTTGATGAAAGACTAAGAATTGCATCTGATGGTCTTATAGTGGTCAGTATGGAAATTTTACGCCCTCAATTTGCTGAGGGTATAGCAGAGAAAACCTTAAAAGGAAAAATAAGAATCACTACACGTTGCTTGTGGCTCGACAAAGGGAAACTTTTGGATGCACTCCATAAAGCTGCACATGCTGCACTGTCAAGCTGTCCTGTGAATTGCCCACTGTCCCACATGGAAAGAACTGTGTCTGATGTTCTAAGAAAAATGGTCATGAAGTACAGTAGTAAAAAACCTGAAGTTATTGCTGTTGCTTTAGAAAATCCTCCAGGAGTCCTGGCAGACGAGATCAAGGGAAAACTTTCTCGAAAGTCAGATGTTGGTTTTGGAATTTCAGCACTTAGAAAAGTGCTAGATGTAGATCAGAGAAAAAGACAGCCAAGTGCAACTCATGCAGAGGAATGCCATGCCCATGCAAATCCAATTAATGATGCAGAACAGCAAATCAAAGGTGATGATCGTATAGATGTCGAGAGATTTATGCATAAGGAAGCAATTACTTCAAGTTCAAGCTCACAGGATAAATTTTCTTCCAGTGAGGGTCTGTCAGATAATTTTTGTAAGTCAGATATAACATCAATACCAGTAGATCAGTTATCAGAAGGCAGTTTTGATAATTTGTCACAAGCGGGATCTGAAGAAATGTTCAGAAAAGTGAGCGTTGGACTTGATTCAAACTTGCTAGAATCTAAGTTGAAATCTTCCAACCCTTTGAAGAGGAACAGATGGAAACCTGAAGAGGTTAAAAAATTGATTAAAATACGAGGGGAACTCCATAGAAGGTTTCAGGTTCTCCGGGGACGAACGGCACTTTGGGAAGAGATATCTTCAAGATTACTTTCTGGTGGAATCGATCGAACTCCTTCACAGTGTAAATCTCAGTGGGCTTCTCAAGAAAGCAAGAATGATATGAGAAGCCAGGAAAAAGGGCCTTACTTTGCCGACATGAGTAACATCTTGTCTGATTTGGAGGCAACGGCTCTGAAATGA
Protein Sequence:
- >Peinf101Scf00635g07018.1|Petunia_inflata|Trihelix|Peinf101Scf00635g07018.1
LSSSVLLGIRGTKGPHKRPAKTEGAGRSIDDSVQRRMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPGYDELGVQKIIPDTTFIKKWSHKIEAVVITHGHEDHIGALPWVIPALDSHTPIFASSFTMKLIKKRLKEFGIFVPSRLKEFKIRRKFSAGPFEVESIRVTHSIPDCSGLVLRCANGTILHTGDWKIDESPLDGKVFDREALEELSKEGVTLMMSDSTNVISPGRTLSETVVADSLLRHISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLEAAWKDGNAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAETRAALNLASYGSSHLLKLNKEDIILYSAKVIPGNDSRVMKMLNRISDIGSTIVMGKNELLHTSGHAHREELEEVLRIVKPQHFLPIHGELLFLKEHELLGRSTGIHHTAVIKNGEMLGISHLRNRKVLSNGFISLGKENFQLMYSDGDKAFGTSAELCVDERLRIASDGLIVVSMEILRPQFAEGIAEKTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLSHMERTVSDVLRKMVMKYSSKKPEVIAVALENPPGVLADEIKGKLSRKSDVGFGISALRKVLDVDQRKRQPSATHAEECHAHANPINDAEQQIKGDDRIDVERFMHKEAITSSSSSQDKFSSSEGLSDNFCKSDITSIPVDQLSEGSFDNLSQAGSEEMFRKVSVGLDSNLLESKLKSSNPLKRNRWKPEEVKKLIKIRGELHRRFQVLRGRTALWEEISSRLLSGGIDRTPSQCKSQWASQESKNDMRSQEKGPYFADMSNILSDLEATALK