Information report for Pahal.I00096.1
Gene Details
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Functional Annotation
- Refseq: XP_025791925.1 — trihelix transcription factor GTL1-like
- TrEMBL: A0A2S3IUZ0 — A0A2S3IUZ0_9POAL; Uncharacterized protein
- STRING: Si034382m — (Setaria italica)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Sequences
CDS Sequence:
- >Pahal.I00096.1|Panicum_hallii|Trihelix|Pahal.I00096.1
ATGCAGCAGCCCGGCATGCCGCCATTCTCGCCTGCCGCCGGGACGCCGGTGGGGGTGGGCCAGAAAGCCTCCACGCCCGCGCCGGCTCCGCCGCCTATCAGCAGCCGGCCACCGGAGGGACAGCAGCAGCAGCAGGTGGTGGACGAGCTCGGCGCCGGCGCCACGGCCTCTGCAGGAGGAGGCAGCAGCTTCGCGGACCACGAAGCAGGGATGTCCGCGGGCGGCGACGAGGGCGACCGCGGCGGGCCGTCGGGCAACCGGTGGCCTCGGCAGGAGACGCTGGCGCTGCTCAAGATCCGGTCGGAGATGGACGCCGCGTTCCGGGAGGCCGCCCTCAAGGGACCCCTCTGGGAGCAAGTCTCCAGGAGGCTGGAGGCGATGGGCTACAAGCGGAGCGCCAAGAAGTGCCGCGAGAAGTTCGAGAACGTCGACAAGTACTACAAGCGCACCAAGGACGGCCGCGCCGGCCGCGGCGACGGCAAGGCTTACCGCTTCTTCTCCGAGCTCGAGGCCCTCCACGGCGCTTCTTCCTCGCCGGCGCCGCACCCGCCGGCGTCCTCTCTCGCGGCGACACCTGTGGCTATGGCGCCGCCGGCCACGCCGCTCGCCGTCCTGGGCGCGCCCGGCATGGCGCCGGCCATGCATGCCGAGCCGCCGCCTCGTGTCGCCTCCGTGCCGCAGCCGGCGCCGCTGATGAGCGGCACCACCACCGCGCCTGCAGCGGCGGCTACGGCCGCCGCAAGCGACGCGGCATGCATGATGACGCCCGGTGACGTGAGCTTCTCCTCGGGCTCGGATGGGGAGGACACGGAGGACACAGGCGACGGCGGGAAGCGGAAGCGGCATGGCGGGGACGTCGGCGGCAGCGGCAGCATCAAGATGATGCGGTTCTTCGAGGGCCTCATGCGTCAGGTGATGGAGCGGCAGGAGGAGATGCAGCAGCGGTTCATCGAGGCCATCGAGAAGCGGGAGCAGGACCGGATGATCCGCGAGGAGGCGTGGAGGCGCCAGGAGGTGGCGCGCCTCGCCCGCGAGCAGGATGCGCTCGCCCAGGAGCGCGCCATGGCCGCGTCCCGCGACGCCGCCGTCGTCTCCTTCATACAACGGGTCACTGGCCAGACCATCCCGATGCCCTCCGTCGCGCCGCCTGCCTTCATCGGCGCGCTGACGCATCCGCCCTTGCAGCCCACGCCGGTGGCTTCCGCTGCCCCGGCGCCGGCGCAGCACCAGCAACCGCCGTCAATTCAGCTGTCGCCGAAGACGCACACAATGCCGAAGCCCGCACAACCCCAACCACAGCATCAGACGCCGCCGCCGGCGCAGCCGCAGAGCAAGGAGATCATCGTCCGTGCGCCGGCGGAGTCGCAAGACACGGCGGGGTCCGGAGGCGGCACGCCGTCGCCGTCGAGGTGGCCCAAGGCGGAGGTGCACGCGCTGATCCAGCTGCGCACGGAGCTGGAGGCGCGGTACCAGGACTCGGGGCCCAAGGGCCCGCTGTGGGAAGACATCTCAGCGGGGATGCGGCGGCTGGGGTACAACCGGAGCGCCAAGCGTTGCAAGGAGAAGTGGGAAAACATCAACAAGTACTTCAAGAAGGTGAAGGAGAGCGACAAGAAGCGGCCCGAGGACTCCAAGACCTGCCCCTACTACCACCAGCTCGACGCGCTCTACCGCAGCAAGGCGCTCGCCTCGTCCGGCGCCGGCGGAGTTGCCGCAGCGGCGGCTCCGCGTCCTGATCATCAGGCAGGTGTCACCGTGCTGGCCGCGGTGCCACTCTCCCAGACGGCGCCCCACGCCGAGCACGGGGGCAAGCAGGACTGTAGCAACGGGAACGGGAGCGGGTGCGCGGGCAGGGGCAGTTCGGACAATGGCGGCAGCTCCGGGGGCATGCAAACGCAGGCGAGCAACGGCAGGTTCTCCGTCGAAGGCGCCGGCGGCAATGGCGCCGCGTCGAACAAGCTGCAACAAGGCATCACCATCACGAAGGAGACGGCGGCGACGGAGCCGAGGCCGCAGCCGGTGTCGATGAACGACAGCTACGTGAACGACACCGTGGACAGCGACAGCAGCATGGACGACGGCGACGAGGAGGACGAGTTCGACGACGACGACGAGGGCAACGTTGGCGGCGGCGGCGGCGGCAACAGCAAGATGCAGTACGAGATCCAGTTCCAGCGGCAGCAGCAGGGCCAGAGCAGCGTCGTCCGGCCGAACGCGAGCGGCGCCGCCGGGTCATCTGGCCCCGGGCCGGCAGCAGCAACAAGTGGGTCGTTCCTGACCATGGTCCATCACTAG
Protein Sequence:
- >Pahal.I00096.1|Panicum_hallii|Trihelix|Pahal.I00096.1
MQQPGMPPFSPAAGTPVGVGQKASTPAPAPPPISSRPPEGQQQQQVVDELGAGATASAGGGSSFADHEAGMSAGGDEGDRGGPSGNRWPRQETLALLKIRSEMDAAFREAALKGPLWEQVSRRLEAMGYKRSAKKCREKFENVDKYYKRTKDGRAGRGDGKAYRFFSELEALHGASSSPAPHPPASSLAATPVAMAPPATPLAVLGAPGMAPAMHAEPPPRVASVPQPAPLMSGTTTAPAAAATAAASDAACMMTPGDVSFSSGSDGEDTEDTGDGGKRKRHGGDVGGSGSIKMMRFFEGLMRQVMERQEEMQQRFIEAIEKREQDRMIREEAWRRQEVARLAREQDALAQERAMAASRDAAVVSFIQRVTGQTIPMPSVAPPAFIGALTHPPLQPTPVASAAPAPAQHQQPPSIQLSPKTHTMPKPAQPQPQHQTPPPAQPQSKEIIVRAPAESQDTAGSGGGTPSPSRWPKAEVHALIQLRTELEARYQDSGPKGPLWEDISAGMRRLGYNRSAKRCKEKWENINKYFKKVKESDKKRPEDSKTCPYYHQLDALYRSKALASSGAGGVAAAAAPRPDHQAGVTVLAAVPLSQTAPHAEHGGKQDCSNGNGSGCAGRGSSDNGGSSGGMQTQASNGRFSVEGAGGNGAASNKLQQGITITKETAATEPRPQPVSMNDSYVNDTVDSDSSMDDGDEEDEFDDDDEGNVGGGGGGNSKMQYEIQFQRQQQGQSSVVRPNASGAAGSSGPGPAAATSGSFLTMVHH*