Information report for Oropetium_20150105_02899A
Gene Details
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Functional Annotation
- Refseq: XP_004953287.1 — trihelix transcription factor GTL1 isoform X1
- Refseq: XP_012699251.1 — trihelix transcription factor GTL1 isoform X1
- Refseq: XP_025798824.1 — trihelix transcription factor GTL1-like isoform X1
- TrEMBL: A0A0A9DG78 — A0A0A9DG78_ARUDO; Uncharacterized protein
- STRING: Si016578m — (Setaria italica)
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Panicum virgatum: Pavir.1NG373800.9.p, Pavir.1NG373800.8.p, Pavir.1NG373800.7.p, Pavir.1NG373800.6.p, Pavir.1NG373800.5.p, Pavir.1NG373800.2.p, Pavir.1NG373800.1.p
- Setaria italica: Seita.1G253600.2.p, Seita.1G253600.1.p, Seita.1G253600.5.p
- Setaria viridis: Sevir.1G257800.6.p, Sevir.1G257800.5.p, Sevir.1G257800.4.p, Sevir.1G257800.2.p, Sevir.1G257800.1.p, Sevir.1G257800.7.p, Sevir.1G257800.3.p
- Zea mays: GRMZM2G169580_P01
Sequences
CDS Sequence:
- >Oropetium_20150105_02899A|Oropetium_thomaeum|Trihelix|Oropetium_20150105_02899A
ATGCTGCACCACCATGGTGGCGCTGGTGGCTCCCCATATACGTCCTCGACGTCCGGCGACGCAATCGCGTTCTCACTGCCGCCTCCACCGAGCGGCCCCATATCTTTTGCCAGCATCCAACGGCTGCCGAGACAGCTGCAACCGCCGGGGACGAGTGCTCTCGCGGAATTGCCGCTCGACGGTTCCAGCGGCGGCGGCGCAGCCGACCTCCACGACGACGATGACGACATGCCGGCCGACGCCTACGGCGCGAGCGAGACGGGAGCTGGAGCGTCCGGCTCCGGCAGCAGTACCCGGTGGCCGCGCGAGGAGACGCTGGCGCTCATCAGGATCCGGTCGGAGTTGGACGCCGCGTTCCGGAACGCCCCGCTCAAGGCGCCCCTCTGGGAGGACGTCGCCAGATTGGAGCCTAGTGAAGTGGTAGGTGTAGTGCAGGACGATAAGGATCTCGGCGCCCGGCAGCTGTATGGGGCAGGGAAGCTTGCGGCGCTGGGCTACCACAGGAGGAGCGCCAAGAAGTGCAAGGAGAAGTTCGAGAACGTGGACAAGTACTACAGACGCACCAAGGAAGCCCGTGCCGGGCGGCAGGACGGCAAGAGCTACCGCTTCTTCTCGGAGCTCGAGGCGCTCCACGCGGCGGCGCCGCAGCGGCATCAGCAGGCCGCGCCCACGGTGCAAGCTGATCCCCAGCCGTCGGCAACAGCAATGGCATGGATGGCGGCGGGGCCGGGATCGTTGGCGCCCGGCCCCTGGCTGCCGGACCTCAGATTCTCGTGGATGTCGGGGTCCGAGTCCGAGTCGGACGACGAGTTCGACGTCCGTGGCGCGGCGGAGGCCGACGCTGACGAGTGCGACAGGGAGATGATGGCCCTCTTCGAAGGAATGATGAGGCAGGTCACCGAGAAGCAGGAGGCGATGCAGCGCGCGTTTCTGGAGACGCTCGAGAGGTGGGAGGCGGAGCGCACGGCGCGCGAGGAGGCGTGGCGGCGGCAGGAGGTCGCCCGCATGAACCGCGAGCGGGAGCAGCTGGCCAAGGAACGCGCCGCCGCGGCCTCCCGCGACGCCGCGCTGATCGCGTTCCTGGAGCGCGTCGGCGGCGGCGGGCCGCATTCCACTGTGCGTCCTCCAAGCTCTGCCGTCGCCGTGCCCACGCCAATGCCGGACCACACCCCTCTTCCATCCCCTCGCCAGGACGCCGCGGCGGCCAGCTCGCTTCAGGTGGTGTCCGTGTACGTGCCGCCGCCCAAGTCGGAGGAGGCGTGGGCGTGGACGGCGGGCGGCGAGAGCGGCGGGTCGACGTCGTCGTCTCGGTGGCCCAAGGAGGAGGTGCAGGCCCTGATCCAGCTGCGGGCGGAGAAAGACGAGCAGCAGTACCACGACACGGGGACGGGGCCCACCAAGGGGCCGCTCTGGGAGGACATCGCCGCCGGGATGCGGAGGATCGGGTACAGCCGGAGCGCGAAGCGGTGCAAGGAGAAGCGCCCCGAGGACTCCAAGACCTGCCCGTACTTCCACCAGCTCGACGCCATGTACCGCAAGAAGCAGCGCTTCGCCGGCACAGGCGGCGTCGCCACCACCGCATCGGGTTCAGGGGCGTATATGACCGCGGCCGTCGCCGGCTCCTGTCAGGCGAGCCCGAGCCAGCGCGAGATCGAGGGAAAGAGCGGTAACGATGTTAGCAAGCAGAACATCGTTGGAGTCGCAAATGTACATGCTGCCCCCGGCAACGGCGAGAAGGAACAGACGACAATCGCTGGTGGCGACGGCATCGAAAGCACGAGAGCCGAAAAAGACACTGAGAGGGAGACAAACTTGCAGCTCCAGCAACGGCGGCAGGAGTTCGCAGGGGACGAGACGGACAGCGACGACGACGTGGAAGGCAACTACTACACCGACGAAGGCAACGGTGGAGACAGCATGCAGTACAGGACGTGGTTCCAGAAGCCTCATGTGACGGGGAGCAGCAGTGGCAACACATCTGCACCAACAGCGCCGGCTACGGCAGCGACGAGTTCAGGGGCCCCAACCGGCAGCACCTTCCTTGCCGTTCAGTAG
Protein Sequence:
- >Oropetium_20150105_02899A|Oropetium_thomaeum|Trihelix|Oropetium_20150105_02899A
MLHHHGGAGGSPYTSSTSGDAIAFSLPPPPSGPISFASIQRLPRQLQPPGTSALAELPLDGSSGGGAADLHDDDDDMPADAYGASETGAGASGSGSSTRWPREETLALIRIRSELDAAFRNAPLKAPLWEDVARLEPSEVVGVVQDDKDLGARQLYGAGKLAALGYHRRSAKKCKEKFENVDKYYRRTKEARAGRQDGKSYRFFSELEALHAAAPQRHQQAAPTVQADPQPSATAMAWMAAGPGSLAPGPWLPDLRFSWMSGSESESDDEFDVRGAAEADADECDREMMALFEGMMRQVTEKQEAMQRAFLETLERWEAERTAREEAWRRQEVARMNREREQLAKERAAAASRDAALIAFLERVGGGGPHSTVRPPSSAVAVPTPMPDHTPLPSPRQDAAAASSLQVVSVYVPPPKSEEAWAWTAGGESGGSTSSSRWPKEEVQALIQLRAEKDEQQYHDTGTGPTKGPLWEDIAAGMRRIGYSRSAKRCKEKRPEDSKTCPYFHQLDAMYRKKQRFAGTGGVATTASGSGAYMTAAVAGSCQASPSQREIEGKSGNDVSKQNIVGVANVHAAPGNGEKEQTTIAGGDGIESTRAEKDTERETNLQLQQRRQEFAGDETDSDDDVEGNYYTDEGNGGDSMQYRTWFQKPHVTGSSSGNTSAPTAPATAATSSGAPTGSTFLAVQ*