Information report for OMERI04G13990.2
Gene Details
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Functional Annotation
- Refseq: XP_015634649.1 — uncharacterized protein LOC4336213 isoform X2
- TrEMBL: A0A0E0DFE4 — A0A0E0DFE4_9ORYZ; Uncharacterized protein
- STRING: ONIVA04G14730.1 — (Oryza nivara)
- GO:0005634 — Cellular Component — nucleus
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0042802 — Molecular Function — identical protein binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Sequences
CDS Sequence:
- >OMERI04G13990.2|Oryza_meridionalis|Trihelix|OMERI04G13990.2
ATGTCGTCGTCCTCGTCACCTCGGGCGCCGGGGGACAGCAGCACACGGAAGCGCCGCCGCCGACTCGCCTCGGGCTCCGGGCCTCGCTGGGCGTCGCTGCCCGAAGATCTGGTGGACCTGGTGGCGTCGCGCTTGCTTGCCGGCGGCGACCTGCTGGACTACGTCCGCTTCCGAGCCGTCTGCACAAGCTGGCGGTCGGCCACCGCCTCCCCGCGCGGCCGCGGCGTCGCCGACCGGCGCTTCCACCCGCGCCGCTGGATGATGCTCCCGGAGGGCCACGGCCTCTACCCGGGCCACCCAAGCCTGCGTGGGTACGCCCGATTCCTCAACCTCGACACGGGGACCCTGGTCCGCGCCCGGATCCCGCTCCTCCGCGATGGCTACGTCGTCATCGACCCCGTCGACGGCCTCCTCCTGCTGCTGCTGGACCCCGACCGGAACCAGGAGGGCGCCGTTCGCCTCCTCCACCCTTTCACCGGCGACACCGCCGAGCTCCCGCCGCTCGGGACGGTCCTCCCGCATCTCGGCTCGCGGCTGCTGGATTGCCCCGCGCCGTCCAGGATCAGGAGCCTCGCGAGGGTCGTCTGCGCTTCTGTCTCCTGCAGCGCCACTGGAGCTGGAGCTGGAGCCATCACCGTCTTGCTTGCACTCTCCGTGGTGTCTCGTGTAGCCTTCGCTACTTCCCTGGACCGGCAATGGAGCCTGTCAACCTACGAATGCGTGACACTCTCTTCACCGATCGCATCCCATGGCAAGATATACCTGATGCATACTGACAGATCATGTGGCGAGAAGATACACCAGGTTCTCCGGATTGACCCACCTGCAGCAGCGAAGGATGGGTCGGGCTCGGGCTCGGGCGCAGGTCGTGCTCTACAAGAGCCAAAGCTGGTTGCCACAATCCCTGCACGCAAACTCGACCATTTTCAAGGTCTGGTAGAATGTGGTTCAGAGATCCTGGTGCTTGGTTGCAAGAACTGGTCTACGTCGCGGATTTCAGTTTTCAAACTTGCGGACCTTGTGCTGCAAAGGTTTATGCCAATAAAAAGCATCGGGGGCCATACCCTGTTCATTGGAGAAAGGAACATAAGTGTCTCTTCTAAGATACTGCCTACAGTCAAGGGTGACAATCTTGTCTACCTTAATTCAGGACTTGTGAAATACCACCTCAGTAGTGGCAGCTTGTCACTGGCAATTGATAATTGCAGCCTGTATGGCCGTGTACCGGGACCTAGTAGCCTCGTCCACTATATCTACAGCTGCTGCATTCGTAATCGGTGGCCATGGCCCGGAACTCGGGCCGGGCCGGGCCGAACGTCCACCGCATCTTCCCCGAGTCCCCCCGGTTCTCCCCTTCTCCGCTCCCCCACTGCTGCCACCACCGCTCCGGTCACCTCCCCCATCGCCGGCTTCCCCTTCGCGCACGGTGCCACTCCCCGAGCCCCGCCCCGNNNNNNNNNNNNNNNNNAGAGCAGCGGCGAGGACGGCGGCCACGACTCCTCCTCCCGCGCGGCGGCGTCGGGCGGCGGCGGCCCCAAGAAGCGCGCGGAGACGTGGGTCCAGGACGAGACCCTCTGCCTCATCGCGCTGCGCCGGGAGATGGACTCCCACTTCAACACCTCCAAGTCCAACAAGCACCTCTGGGAGGCCATCTCGGCCAGGATGCGGGAGCAAGGGTTCGACCGCTCCCCGACCATGTGCACCGACAAGTGGCGGAACCTCCTCAAGGAGTTCAAGAAGGCGCGCAGCCACGCGCGGGGCGGTGGTGGCGTGGGCGGCGGCGGCGTGGGCGGCGGCGCCGGCGGCGGGAATTGCCCCGCCAAGATGGCGTGCTACAAGGAGATCGACGACCTGCTCAAGCGCCGCGGGAAGCCGGCGGGCGGTGGCGGCGCCGCCGTGGGGAGTGGCGCCGTGAAGAGCCCCACGGTCACCTCCAAGATCGACTCCTACCTGCAGTTCGACAAGGGTTTTGAAGATGCTAGCATTCCGTTCGGCCCTGTTGAAGGTGGAGATAATCAGGTTACTTTTGGTGGGAGAGTCATTTTAGTCAAGTGGGGTGATTACACTAAAAGAATAGGCATTGATGGTACTGCAGATGCAATTAAAGAAGCCATCAAATCGGCATTTGGTCTAAGAACAAGACGGGCCTTTTGGCTTGAAGATGAGGATGAGGTTGTCCGTTCCTTAGACAGGGATATGCCGGTTGGAACATACACCCTTCATCTCGATACCGGAATGACCATCAAACTATATATGTTCGAAAACGATGAGGTCCGGACAGAAGATAAGACATTCTACACTGAAGAGGACTTCCGAGATTTTCTCTCGCGGCGTGGTTGGACACTCCTCAGGGAGTATTCAGGCTACAGAATCGCTGATACTCTGGATGACCTTCGTCCTGGTGTGATTTATGAAGGGATGCGATCACTTGGTGATTGA
Protein Sequence:
- >OMERI04G13990.2|Oryza_meridionalis|Trihelix|OMERI04G13990.2
MSSSSSPRAPGDSSTRKRRRRLASGSGPRWASLPEDLVDLVASRLLAGGDLLDYVRFRAVCTSWRSATASPRGRGVADRRFHPRRWMMLPEGHGLYPGHPSLRGYARFLNLDTGTLVRARIPLLRDGYVVIDPVDGLLLLLLDPDRNQEGAVRLLHPFTGDTAELPPLGTVLPHLGSRLLDCPAPSRIRSLARVVCASVSCSATGAGAGAITVLLALSVVSRVAFATSLDRQWSLSTYECVTLSSPIASHGKIYLMHTDRSCGEKIHQVLRIDPPAAAKDGSGSGSGAGRALQEPKLVATIPARKLDHFQGLVECGSEILVLGCKNWSTSRISVFKLADLVLQRFMPIKSIGGHTLFIGERNISVSSKILPTVKGDNLVYLNSGLVKYHLSSGSLSLAIDNCSLYGRVPGPSSLVHYIYSCCIRNRWPWPGTRAGPGRTSTASSPSPPGSPLLRSPTAATTAPVTSPIAGFPFAHGATPRAPPRXXXXXXSSGEDGGHDSSSRAAASGGGGPKKRAETWVQDETLCLIALRREMDSHFNTSKSNKHLWEAISARMREQGFDRSPTMCTDKWRNLLKEFKKARSHARGGGGVGGGGVGGGAGGGNCPAKMACYKEIDDLLKRRGKPAGGGGAAVGSGAVKSPTVTSKIDSYLQFDKGFEDASIPFGPVEGGDNQVTFGGRVILVKWGDYTKRIGIDGTADAIKEAIKSAFGLRTRRAFWLEDEDEVVRSLDRDMPVGTYTLHLDTGMTIKLYMFENDEVRTEDKTFYTEEDFRDFLSRRGWTLLREYSGYRIADTLDDLRPGVIYEGMRSLGD