Information report for OGLUM12G04560.1
Gene Details
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Functional Annotation
- TrEMBL: A0A0E0BPE1 — A0A0E0BPE1_9ORYZ; Tubby-like F-box protein
- STRING: OGLUM12G04560.1 — (Oryza glumipatula)
- GO:0005515 — Molecular Function — protein binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Sequences
CDS Sequence:
- >OGLUM12G04560.1|Oryza_glumaepatula|Trihelix|OGLUM12G04560.1
ATGCATGCTCCAAATCCTGGAAAGCAGGGCTTTGACCATACTCAGATGCCTGGCAATTTATCGATGCATGTAAACCAGTCTACAGATTCTGATCACTTGTCAGAATTTCAATTCGGAGAGCTTGGAAAGGTTGACCACCACCACCACCATCACCATCGTCAACACGCCAAGAACGGCATGAGTGATGATGAGGAACATGGTGTCAACGAGGATGCCACTGATAGCCAGAGCGGCAAGGGAAAGAAGGGCGCTGCATGGCAGCGGATGAAGTGGACTGATTCAATGGTCAAGCTTTTAATTACTGCAGTATCTTACACTGGGGAGGATCCAGGAGCTGATTCAGGAGCTGGGAAGAGAAACTCTGCAATAATGCAGAAAAAGGGCAAGTGGAAGGCAATATCAAAGGTCATGGGTGAGCGAGGCTGCAGTGTATCACCGCAGCAATGTGAAGATAAATTCAATGATCTCAATAAGAGATACAAAAGACTTACAGATATCCTTGGCCGGGGTACAGCTTGCAAGATTGTGGAGAATCATGCTCTGCTGGATTGCATGAGTAATCTGTCTGACAAGATGAAAGATGATGCGAGGAAGATACTGAGTTCAAAGCACTTGTTCTACGAGGAGATGTGCTCCTACCATAATAACAATCGAGTGAGTTTGCCTGAAGATCCTGCCCTTCAGCGTTCACTGCAGCTTGCCCTTAGATGTAAAGATGAGCATGATCTGAGGAGGGGAACAAGCGGAGATGCTGATGAAGATGATCAAAGTGTAGACTCTGATTCCGAGGAGGAGAATGATGAGGAACATTACACATTACAAGGTGATAAGAGTGCCCTGCCCATGCATAAAAGATTGAGGCATATGACAGATCAGGAGGATGTGGGTTTTGGCAACTCTTCCAGCTCACATGGATGCAGCAGGAGGTCTGATTCCCATGGCATATCACTGGATATCAACAAAGCATTTCCTGATGGAACCAACTTGGCTTTGGCGCAAAAGGATTTGGCTACACAATCTGCAGATCTTGAGGAACAAAGGTTGCAGATTGAAGTCCAGGCAGTCTATCTTGCAAAACAACGGCTCAAATGGGAGCGCTTCAGTAAAAATAAGGATAGAGAACTGGAACAGATGAGGTTAGAGAATGAAAAAATGAGGCTTGAGAATAAGCGCTTGGAGCTGGAGCTAGGGACCTTTTCTATCTGCTTCATGGCATTGTACCAGTCCTCTGCAAGCAGTCGCGTCCCCCCAACACTTGTCCAGCCACTACCACTTGTTCTTTCCTTCCCCTCCTCTTCCTCCTCCTCCTCCGATCCCCATGCCTCCTCCGCCTCCGCCTCCCTCCCCCGCCGGCCACCGCTAGCCGCCGCCGGCGCCACCCCCGAGCGAGGCGAGGCGGAGATGTCGTTCCGCAGCATTGTCCGCGACGTGCGCGACGGGTTCGGGAGCCTGTCCAGGCGAGGGTTCGAGGTGAGGCTGGTGGGGCACCGGAGGGGGAGGTCTCACAGCGCGGTGCACGAGCTGCGTGACGGCCACGCGGCCGCCGCCGCCGCCGCCGACGTGGTCCAGAGCAGCTGCTGGGCTAACCTGCCGCCGGAGTTGCTCCGGGACGTGATCGAGCGGCTGGAGGCCAGCGAGGCGGCGTGGCCGTCCAGGAAGAACGTCGTCGCGTGCGCCGCCGTGTGCCGGACATGGAGGGACATGTGTAGAGAGATCGTCAAGAACCCCGAGTTTTGCGGGAAGATCACTTTTCCTGTTTCCCTCAAGCAGCCTGGGCCCCGGGATGGAGCCATCCAGTGCTTCATTAAAAGGGATAAATCTACCCAAACTTACAACCTATATCTATGTCTTAGCTCAGCTGTGCTCGTTGAAAGTGGCAAGTTCCTTTTATCGGCGAAAAGATACTCCCGTGCAACCTGTACAGAATATACAATATTTATGAGTGCTGACAATACATCTAGGTCAAGCAACATGTACATTGGAAAATTGAGGTCAAATCTTCTCGGAACAAAGTTTGTAATATATGATACCCAACCTCCATGCAACACAGCCAATGTTTCACAGTCAGGGAAAACAAGCCGTAGGTTCTACTCCAGGAAGGTGTCGCCAAAGAACCCTTCCAGCACCTACAGCATAGCTCAAGTTTCATATGAACTGAATGTCTTGGGGACTCGGGGTCCTAGGCGGATGAACTGTGTGATGCACTCAATCCCTGCCTCATCGCTTGAGGCTGGTGGCACTGTCCCATGCCAGCCAGACAGTGTGCTTGCACGCTCTCTTGATGAGTCATTTGGCAGCATCTCCTTTTCCAAGTCATCCATTATGGACCGCGCTATCCGTTTCAGCAGTAGCAGATATTCTGACATCTCAGTAGGTGGCCCCATGGTCGGAGGCCAGGCATTGGGTGACAGTGATGAGTCCAAGGAGAGGCCATTGATTCTCCGTAACAAGGCCCCAAGATGGCACGAGCAGTTGCAGTGCTGGTGCCTCAACTTCAAGGGCAGGGTAACCGTCGCGTCTGTGAAGAACTTCCAGCTTGTTGCTGCAACACAGCCTGCTGCTGGAGCCCCGACGCCATCGCAACCTGCCCCGCCGCCTCCACCTGATCATGACAAGGTCATACTACAATTTGGTAAGGTTGCGAAGGATATGTTCACAATGGACTATCGTTACCCCCTTTCGGCCTTCCAGGCCTTTGCAATCTGCTTGAGTAGTTTCGACACCAAGCTGGCCTGCGAATGA
Protein Sequence:
- >OGLUM12G04560.1|Oryza_glumaepatula|Trihelix|OGLUM12G04560.1
MHAPNPGKQGFDHTQMPGNLSMHVNQSTDSDHLSEFQFGELGKVDHHHHHHHRQHAKNGMSDDEEHGVNEDATDSQSGKGKKGAAWQRMKWTDSMVKLLITAVSYTGEDPGADSGAGKRNSAIMQKKGKWKAISKVMGERGCSVSPQQCEDKFNDLNKRYKRLTDILGRGTACKIVENHALLDCMSNLSDKMKDDARKILSSKHLFYEEMCSYHNNNRVSLPEDPALQRSLQLALRCKDEHDLRRGTSGDADEDDQSVDSDSEEENDEEHYTLQGDKSALPMHKRLRHMTDQEDVGFGNSSSSHGCSRRSDSHGISLDINKAFPDGTNLALAQKDLATQSADLEEQRLQIEVQAVYLAKQRLKWERFSKNKDRELEQMRLENEKMRLENKRLELELGTFSICFMALYQSSASSRVPPTLVQPLPLVLSFPSSSSSSSDPHASSASASLPRRPPLAAAGATPERGEAEMSFRSIVRDVRDGFGSLSRRGFEVRLVGHRRGRSHSAVHELRDGHAAAAAAADVVQSSCWANLPPELLRDVIERLEASEAAWPSRKNVVACAAVCRTWRDMCREIVKNPEFCGKITFPVSLKQPGPRDGAIQCFIKRDKSTQTYNLYLCLSSAVLVESGKFLLSAKRYSRATCTEYTIFMSADNTSRSSNMYIGKLRSNLLGTKFVIYDTQPPCNTANVSQSGKTSRRFYSRKVSPKNPSSTYSIAQVSYELNVLGTRGPRRMNCVMHSIPASSLEAGGTVPCQPDSVLARSLDESFGSISFSKSSIMDRAIRFSSSRYSDISVGGPMVGGQALGDSDESKERPLILRNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAATQPAAGAPTPSQPAPPPPPDHDKVILQFGKVAKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE