Information report for NNU_003545-RA
Gene Details
|
|
Functional Annotation
- Refseq: XP_010249791.1 — PREDICTED: trihelix transcription factor ASIL2-like
- Refseq: XP_010249792.1 — PREDICTED: trihelix transcription factor ASIL2-like
- Refseq: XP_010249793.1 — PREDICTED: trihelix transcription factor ASIL2-like
- Refseq: XP_010249794.1 — PREDICTED: trihelix transcription factor ASIL2-like
- Refseq: XP_010249795.1 — PREDICTED: trihelix transcription factor ASIL2-like
- Refseq: XP_010249796.1 — PREDICTED: trihelix transcription factor ASIL2-like
- Refseq: XP_010249797.1 — PREDICTED: trihelix transcription factor ASIL2-like
- Refseq: XP_010249798.1 — PREDICTED: trihelix transcription factor ASIL2-like
- Refseq: XP_010249799.1 — PREDICTED: trihelix transcription factor ASIL2-like
- Refseq: XP_010249800.1 — PREDICTED: trihelix transcription factor ASIL2-like
- Refseq: XP_010249801.1 — PREDICTED: trihelix transcription factor ASIL2-like
- Refseq: XP_019052392.1 — PREDICTED: trihelix transcription factor ASIL2-like
- Refseq: XP_019052393.1 — PREDICTED: trihelix transcription factor ASIL2-like
- Refseq: XP_019052394.1 — PREDICTED: trihelix transcription factor ASIL2-like
- Refseq: XP_019052395.1 — PREDICTED: trihelix transcription factor ASIL2-like
- TrEMBL: A0A1U7ZNX8 — A0A1U7ZNX8_NELNU; trihelix transcription factor ASIL2-like
- STRING: XP_010249791.1 — (Nelumbo nucifera)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Actinidia chinensis: Achn114711
- Capsicum annuum: CA12g10610
- Citrus sinensis: orange1.1g048259m
- Gossypium arboreum: Cotton_A_28289_BGI-A2_v1.0, Cotton_A_11840_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A06G1646, Gh_D06G2013, Gh_D10G0675, Gh_A10G0711
- Juglans regia: WALNUT_00026222-RA, WALNUT_00021765-RA
- Malus domestica: MDP0000276691
- Manihot esculenta: Manes.04G123900.1.p
- Populus trichocarpa: Potri.003G056000.1, Potri.001G179800.1
- Pyrus bretschneideri: Pbr034589.1
- Solanum melongena: Sme2.5_01862.1_g00008.1
- Solanum tuberosum: PGSC0003DMP400054664
- Ziziphus jujuba: XP_015867557.1, XP_015867549.1
Sequences
CDS Sequence:
- >NNU_003545-RA|Nelumbo_nucifera|Trihelix|NNU_003545-RA
ATGGACGACACGGATGACGATGCAAGGTATCCTCCGAATCCTTACTCTGGAAATTACCACCAGAACTACGGTTCTTCGCATCGCCAGAAGCTTCCGGTGCGAAACGCCTCTTATCTGCAGGCTGGTGGTAATGAATATGGTGACGAAGATGAGGATGAAGATGAAGCAGAAGAGGAGGAGGAGGAAGAGGAGGAAGAGGAAGACGAAGAAGCAGGTGTGCAGCGTGTTGCAGAAGGGGCAAATGAAGATGAAGATGATGTCGAGGACGACGATGGAGAGAGAGACAATTATCGGAGGAGGGTTGAAGTTGAGGATGAGTCAGAGAGGCACAGAAAGAAGCGAAAGCTTAAGAATTTAGGTTACGAGTTTGCTCCTCGGGTAGCAGCACCGTCTGTTGCTGCCACTGCTGTTACTACTGCGCCCAAGCCATCCTTTGGTGGCCGGAATTCCCCAGCTGATTGGACAGAACATGAAACTTTTGTTCTACTAGATGCTTGGGGTGATCGGTTTCTTCAGCTTGGGAGGAAGAGTCTTCGATCTGACGAATGGCATGAAGTTGCAAACAAGGTTTCAGAAGAGTCAAATACCATTAGGACGGATACTCAATGCCGCAATCGTTTGGATACGTTGAAGAAGAAATACAAAAGGGAGAAGATGAAGTTAGCAGAAACTGGTGGCACAACCTGTAAATGGGTTTATTTTAAGAAAATGGACATGCTCATGACATCATCACCACGGCAACCTGGGTTGTCATGTGGATTGGATTCTGGTGAGTATGTGTTTATGAATCCCCGAAAATTTGGAGAGATTTATGAGAAGATTGAGAACAGTAAGAGGCAGCAGTTGCTAGAATTAGAGAAAATGAGGATGGAATTCCATAGAGATTTGGAATTACAGAAGAGGCAGATCCTAGAGAGAGCACAGGCAGAGATTGCAAAAATAAGGCAGGGAAGTGATGATGATGATAATGATGATGATGATGATAATGATGATGATGATGATGATGATGACGACGATGATGATGAAATTGATGTTTCTGCTGAAAATATCAGTGGGTGA
Protein Sequence:
- >NNU_003545-RA|Nelumbo_nucifera|Trihelix|NNU_003545-RA
MDDTDDDARYPPNPYSGNYHQNYGSSHRQKLPVRNASYLQAGGNEYGDEDEDEDEAEEEEEEEEEEEDEEAGVQRVAEGANEDEDDVEDDDGERDNYRRRVEVEDESERHRKKRKLKNLGYEFAPRVAAPSVAATAVTTAPKPSFGGRNSPADWTEHETFVLLDAWGDRFLQLGRKSLRSDEWHEVANKVSEESNTIRTDTQCRNRLDTLKKKYKREKMKLAETGGTTCKWVYFKKMDMLMTSSPRQPGLSCGLDSGEYVFMNPRKFGEIYEKIENSKRQQLLELEKMRMEFHRDLELQKRQILERAQAEIAKIRQGSDDDDNDDDDDNDDDDDDDDDDDDEIDVSAENISG