Information report for mrna16528.1-v1.0-hybrid
Gene Details
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Functional Annotation
- Refseq: XP_004302032.1 — PREDICTED: trihelix transcription factor GTL2
- TrEMBL: A0A2H4NFW6 — A0A2H4NFW6_FRAAN; Trihelix transcription factor GT-2C
- STRING: XP_004302032.1 — (Fragaria vesca)
- GO:0045893 — Biological Process — positive regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0001158 — Molecular Function — enhancer sequence-specific DNA binding
- GO:0005516 — Molecular Function — calmodulin binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Actinidia chinensis: Achn009891
- Cicer arietinum: XP_004495792.1
- Glycine max: Glyma.10G161200.1.p
- Gossypium arboreum: Cotton_A_14977_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D11G2607, Gh_A11G2296
- Juglans regia: WALNUT_00017100-RA, WALNUT_00032082-RA
- Malus domestica: MDP0000209313
- Manihot esculenta: Manes.09G154300.1.p, Manes.08G132700.1.p
- Medicago truncatula: Medtr1g081180.1
- Populus trichocarpa: Potri.013G039100.2, Potri.013G039100.1
- Prunus mume: XP_008218241.1
- Prunus persica: Prupe.6G341000.1.p
- Ricinus communis: 30128.m008610
- Sesamum indicum: XP_011078730.1
- Ziziphus jujuba: XP_015875344.1
Sequences
CDS Sequence:
- >mrna16528.1-v1.0-hybrid|Fragaria_vesca|Trihelix|mrna16528.1-v1.0-hybrid
ATGTTCGATGGAGTCGACCCAGCTGAGCAGTTGCACCAATTCATAGCAGCCTCAAGAACTTCACTCCCTCTCCCTCTTCCCAATATCCCCCTCTCTTCCTTCCCTAATCTCCAACCCTTCGATCATCCCCACCACCATCATCATCATAACTACAACATCATCAACCCTCCTCCTCCTCCACCACCGCCTCAAGAACTTGTGCAGCTTCAGCCACCTCCTCACAATCAGCTTCTGCATCCGTCTGTAGTACTTCACCGACGCGGAAATGATCAAGAGAAGCAAGAAAGCAGCACTACCTTGGTCTTGCCCTCATCGAATATGGAGATCGAACGACAGCAAGCCGCACCGGAATTGCCTAGCGATCCCTGGAGTAACGATGAGCTGCTTGCACTGCTCCGGATCAGATCTACCATGGAGAATTGGTTCCCTGAGTTCACTTGGGAACATGTATCAAGGAAGCTAGCAGAGGCAGGCTTTAAAAGGAGCGCGGAGAAGTGCAAGGAGAAGTTTGAAGAGGAAAGCAGGTACTTCAACAACATCAACTTCAATAAGAACTTCAGGTTTCTCAGTGAGCTTGAGCAGCTCTATCAACCACCACCAGTCGAGCCACCTCAGAACCCAGCTGAGGATCAACCAGAAAAGAATGTTACCCAAAAGGAATTAGCAGTAGAAGTTGAAAAGCCAAGTGAAGAACTAGGAGATCACCAAGATAAAAGTCATCAACCAGCTTCTGATGCTCAAGAGACGTCACCAAGCAATGATCAAACGGTGAGTGAGAAAGGGATGGAAGTTGTTAGAGCAAAGAGCAACAACAAGAAGAGGAAGAGGCAAAGGAGATTTGAAATGCTGAAAGGTTTCTGTGAGGACATTGTGAACAAGTTGATGGCTCAACAAGAAGAGATTCACAGTAAGCTACTTGAAGACATGGTGAGGAGAGATGAAGAGAAGCTTGCAAAGGAAGAAGCTTGGAAGAAGCAAGAGATGGATAGGATGAACAAGGAGCTCGAAACCATGGCACAAGAACAAGCTGTTGCAGGTGATAGACAAGCTACAATCATTCAGTTCTTGAAGAAATACACATCATCAGTTAGTACTAGTAGTAGTACTAACCCTAGTAATGGCCAAACGGAAACTGATCAAGAACCAATAACACCATCCACAATGGTCCCAACTGCAAGCAAAGCTCACAAGCCTACTACAACTACTTCTTTCCACACCCAAAATATTCCAAGCACACCCACTTCACTGACTGAAGCCATTGCGCCACAAAGCCCTAGTTCCAGCAATCTGAGCAATATCAACCCAAAACTGCCTGCTGTTTCATCTCCGCCTCCGGAAAACCCTAGCTCCGATCATCTCAAAACTCAAAACCCTAGCTCGAACGACAAGCCGCAAGACCTCGGAAAGAGGTGGCCGAGGGACGAAGTCTTGGCTCTGATCAACCTCCGGTGCAGTCTCTTCAACAATGTCGATCAACAAGACAAGGATAAAGACGTGATCAAGGCTCCACTGTGGGAGAGAATCTCACAAGGGATGTCGGAGATGGGTTACAAGAGAAACGCCAAGAGGTGCAAAGAGAAATGGGAGAACATCAATAAGTACTTTAGGAAAACAAAGGATGTGAACAAGAAGAGGTCGCTTGACTCGAGGACTTGCCCTTATTTTCATCAACTAAGCACCTTGTACAACCAAGGCATACTCGTACCGCCTTCCGACCACCAAGCGCCGCCGCCGGGGAAACGCTCACCGGAGAAACAGTCATCATCTCTAGCTGAAGGTGAGAAAAACAATGTGGTACCGGCAGCTTTTGATTTTGAATTCTGA
Protein Sequence:
- >mrna16528.1-v1.0-hybrid|Fragaria_vesca|Trihelix|mrna16528.1-v1.0-hybrid
MFDGVDPAEQLHQFIAASRTSLPLPLPNIPLSSFPNLQPFDHPHHHHHHNYNIINPPPPPPPPQELVQLQPPPHNQLLHPSVVLHRRGNDQEKQESSTTLVLPSSNMEIERQQAAPELPSDPWSNDELLALLRIRSTMENWFPEFTWEHVSRKLAEAGFKRSAEKCKEKFEEESRYFNNINFNKNFRFLSELEQLYQPPPVEPPQNPAEDQPEKNVTQKELAVEVEKPSEELGDHQDKSHQPASDAQETSPSNDQTVSEKGMEVVRAKSNNKKRKRQRRFEMLKGFCEDIVNKLMAQQEEIHSKLLEDMVRRDEEKLAKEEAWKKQEMDRMNKELETMAQEQAVAGDRQATIIQFLKKYTSSVSTSSSTNPSNGQTETDQEPITPSTMVPTASKAHKPTTTTSFHTQNIPSTPTSLTEAIAPQSPSSSNLSNINPKLPAVSSPPPENPSSDHLKTQNPSSNDKPQDLGKRWPRDEVLALINLRCSLFNNVDQQDKDKDVIKAPLWERISQGMSEMGYKRNAKRCKEKWENINKYFRKTKDVNKKRSLDSRTCPYFHQLSTLYNQGILVPPSDHQAPPPGKRSPEKQSSSLAEGEKNNVVPAAFDFEF*