Information report for mrna08175.1-v1.0-hybrid
Gene Details
|
|
Functional Annotation
- Refseq: XP_004290520.1 — PREDICTED: trihelix transcription factor GT-2
- TrEMBL: A0A2H4NFX1 — A0A2H4NFX1_FRAAN; Trihelix transcription factor GT-2B
- STRING: XP_004290520.1 — (Fragaria vesca)
- GO:0010192 — Biological Process — mucilage biosynthetic process
- GO:0044212 — Molecular Function — transcription regulatory region DNA binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Cajanus cajan: C.cajan_43791
- Cicer arietinum: XP_004496473.1
- Citrus sinensis: orange1.1g006925m, orange1.1g006924m
- Glycine max: Glyma.16G167600.1.p, Glyma.20G166600.1.p, Glyma.02G082100.2.p, Glyma.02G082100.1.p
- Juglans regia: WALNUT_00024662-RA, WALNUT_00012588-RA
- Lotus japonicus: Lj0g3v0303659.1
- Malus domestica: MDP0000156139, MDP0000451107
- Manihot esculenta: Manes.02G179100.1.p
- Medicago truncatula: Medtr1g098900.1
- Populus trichocarpa: Potri.002G068600.1
- Prunus mume: XP_008237583.1
- Prunus persica: Prupe.8G028700.1.p
- Pyrus bretschneideri: Pbr010534.1, Pbr036348.1
Sequences
CDS Sequence:
- >mrna08175.1-v1.0-hybrid|Fragaria_vesca|Trihelix|mrna08175.1-v1.0-hybrid
ATGTCAGATCAGCTTTCAATGATTAAAGTAAAGAGAGATAGAGAGAGAGGGTACCCTATGCTGGGGGACTTAGGGAGCTCCTCCGATGCCACCACCGCCACCGCTACGGCTGTTAAGCCTTTCGGGGCTCACGAGGGCGGTGGCGGTGATGGCGGGGTCGGCTCGAACTCGGGGGAAGAGGAGAAGAATAGTTATAGCAGAGGCGGTGGCGGTGGCGGTGACGATTTTGGTGATAGGAGCTTCGGTGGCAACCGATGGCCTCGCCAGGAAACGTTGGCTCTCTTGAAGATTCGGTCTGATATGGACGTGGCGTTTCGTGATGCAAGTGTTAAAGGTCCATTATGGGATGAAGTTTCAAGGAAGCTAGCAGAGCTTGGCTTTCATCGAAGCGCCAAGAAATGCAAGGAGAAATTCGAGAACGTCTACAAGTATCACAGGAGAACAAAAGAAGGCCGAACTGGCAAATCCGAGGGCAAGACCTATCGGTTTTTCGATCAGTTACAAGCCCTTGAAAATCAACCTCCTACTCCGACCACGCCCAACTCTACTACCACTCATCAACCAAGGCCGCAACCCACAATTGCAATGGCAGTGTCAAACCCTCCTCCTCTTCCTACAATTTCTCACATCAATAGTACTAGTACTAACAGTACTAATACTGTTCCATCAGCTGCACCACACCAAGGCATTGCAACACCAACAATCCCTAGCTCGTTATTCCCTCCAACAAACCCTATAACATTCACACCACCGCCGCAGCCTCCGCCGCAACAAAACCCTACTTCTCACCACCAGCATCACCAGGCCACTACATTTGTCCCGCCTTCTACATTTCCGAGCATATCATCCACCGACCTCATGTCGAATTCGACATCTTCGTCAACCTCATCCGACGAAGAAATGGAAGGTCGTGCCAAGAGGAAGAGGAAGTGGAAGGACTTCTTCGAGACCCTGATGAAGCAGGTTGTCTACAAGCAGGAGGATCTCCAGAAGAGGTTCCTTGAAGCCATCGAGAAGCGCGAGCACGAGCGAATGGCAAGAGAAGAAGCTTGGAGAATGCAGGAGATGGCCCGCATTAACCGCGAACGTGAAATTCTCGCCCAAGAACGCTCCATCGCCGCCGCCAAAGACTCCGCCGTCATGTCCTTCTTGCAAAAAATAGCCGAACAACAGCATAACCCCCAAGCCACACCCACTATTACTCCTAATAACCATTTGGTGACGTCACATCCGCCGCAGCCACACCCACCACCAGCTCAGCAACCAGCTCCTCCTCCGCAACGGCAGCAGACTACACCACCACCGCCAGCACTGCAGATAACACAAGCGCCGATCACGAGTTTCGAGATTACTCCGAGAGCAAACGGTGAGAGTAACAACGACAATAATAATATGGTAAGTGCTACTACTACGCCGAGCTCATCGAGATGGCCGAGAGTGGAGGTACATTCACTCATCAAGCTAAGAACAAGTCTGGACTCAAAGTACCAAGAGAACGGCCCCAAGGGACCTCTCTGGGAGGAGATATCGGCAGGGATGAAGAAGCTCGGGTACAACCGGAGCGCGAAGAGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAGGTGAAGGAGAGCAACAAGAAGAGGCCCGAGGATTCCAAGACGTGTCCTTACTTCCACCTCCTCGACAGTTTGTACAAAGAGAGGAACAACAAGTACTTTGATCAGATGGGGAATAATAATAATAATAACGACAACAATAATTCACCAAAGCCGGAGAACAATGCGGCGCCGATGATGGTGAGGCCGGAGCAGCAGTGGCAACCTCCGAGGGTGGAACCAGAAATGGATCAAAACCATGAGGAAGAAGAGAGGGATGGTGACGAGGACGAGGACGAGGACGATGAGGAAGACGAGGGCAACTATGAGATAGTGGCAAACAAAGGAGCTTCAGTTTCAGTGGGAGCATCAGCAACAGCTGAGTGA
Protein Sequence:
- >mrna08175.1-v1.0-hybrid|Fragaria_vesca|Trihelix|mrna08175.1-v1.0-hybrid
MSDQLSMIKVKRDRERGYPMLGDLGSSSDATTATATAVKPFGAHEGGGGDGGVGSNSGEEEKNSYSRGGGGGGDDFGDRSFGGNRWPRQETLALLKIRSDMDVAFRDASVKGPLWDEVSRKLAELGFHRSAKKCKEKFENVYKYHRRTKEGRTGKSEGKTYRFFDQLQALENQPPTPTTPNSTTTHQPRPQPTIAMAVSNPPPLPTISHINSTSTNSTNTVPSAAPHQGIATPTIPSSLFPPTNPITFTPPPQPPPQQNPTSHHQHHQATTFVPPSTFPSISSTDLMSNSTSSSTSSDEEMEGRAKRKRKWKDFFETLMKQVVYKQEDLQKRFLEAIEKREHERMAREEAWRMQEMARINREREILAQERSIAAAKDSAVMSFLQKIAEQQHNPQATPTITPNNHLVTSHPPQPHPPPAQQPAPPPQRQQTTPPPPALQITQAPITSFEITPRANGESNNDNNNMVSATTTPSSSRWPRVEVHSLIKLRTSLDSKYQENGPKGPLWEEISAGMKKLGYNRSAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHLLDSLYKERNNKYFDQMGNNNNNNDNNNSPKPENNAAPMMVRPEQQWQPPRVEPEMDQNHEEEERDGDEDEDEDDEEDEGNYEIVANKGASVSVGASATAE*