Information report for MELO3C026230P1
Gene Details
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Functional Annotation
- Refseq: XP_008464473.1 — PREDICTED: ribonuclease J isoform X1
- Swissprot: Q84W56 — RNJ_ARATH; Ribonuclease J
- TrEMBL: A0A1S3CLZ6 — A0A1S3CLZ6_CUCME; ribonuclease J isoform X1
- STRING: XP_008464473.1 — (Cucumis melo)
- GO:0009658 — Biological Process — chloroplast organization
- GO:0009942 — Biological Process — longitudinal axis specification
- GO:0060918 — Biological Process — auxin transport
- GO:0009507 — Cellular Component — chloroplast
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Cucumis sativus: Cucsa.157420.1
- Fragaria vesca: mrna06360.1-v1.0-hybrid
- Gossypium hirsutum: Gh_D07G0523, Gh_A07G0459, Gh_D03G1080
- Manihot esculenta: Manes.14G052700.2.p, Manes.14G052700.1.p
- Populus trichocarpa: Potri.012G095800.1, Potri.015G093600.1
- Prunus mume: XP_016651115.1, XP_008239449.1
- Prunus persica: Prupe.5G152800.1.p, Prupe.5G152800.3.p
- Pyrus bretschneideri: Pbr017747.1, Pbr017741.1, Pbr041014.1
- Ricinus communis: 30147.m014528
- Vitis vinifera: GSVIVT01008515001
- Ziziphus jujuba: XP_015881808.1
Sequences
CDS Sequence:
- >MELO3C026230P1|Cucumis_melo|Trihelix|MELO3C026230P1
ATGCAATTAGAATTTTTGGGAGGTTCTTCCATCCTCGGTTCGTCGCATTCAGCTCCATACAAGCAGAGGATGGCATCTTTTGGCGCTCTTTCACTTTGTCCCTGCAGCCCACTTTTACGCCCTCATCACCCAGTTCGTACTATTTATTGTTGCCATGGATCTCCTACAGTTTTAGGCAAAAATGTTTCTAAAGTACCCCGAAAAAGACCTGGGAGATTGGAAGGTGCTAAAAGAAGCATGGAAGACTCTGTTCAACGCAAGATGGAACAGTTTTATGAAGGTTCAGATGGTCCACCTCTCCGAGTTCTTCCAATCGGTGGCCTTGGTGAAATTGGGATGAATTGTATGCTTGTTGGGAATTATGACCGCTACATTCTGATTGATGCTGGCGTCATGTTTCCTGACCATGATGAGCTTGGTGTCCAGAAAATTATACCTGATACCACATTTATCAAGAGATGGAGTCACAAAATTGAAGCTGTTGTTATTACACATGGCCATGAAGATCACATTGGTGCGTTGCCTTGGGTAATTCCAGCTTTGGATTCTCATACACCAATATATGCATCTTCCTTTACAGTGGAGCTTATAAAAAAGCGTCTGAAGGAAAATGGTATTTTTGTTCCTTCTCGACTGAAGGTGTTTAAGATGAGAAAGAGATTTACAGCTGGGCCATTTGAAATAGAGCCAATTAGGGTTACTCATTCCATTCCCGATTGTTGTGGATTAGTTCTTCGATGTACTGATGGTACAATTCTTCATACTGGAGACTGGAAGATTGATGAATCGCCATTGGATGGTAAAGTATTTGATCGAGAAACTTTGGAACAACTATCAAAAGAAGGAGTGACTCTTATGATGAGTGACTCAACGAACGTACTATCTCCTGGAAGAACCATTAGTGAATCTGTGGTGGCAGATGCACTTTTAAGACGTATCTCTGCCGCTAAAGGAAGGGTCATCACGACTCAGTTTGCTTCAAATATACACCGCCTTGGAAGTGTGAAAGCAGCCGCAGATTTAACTGGCAGAAAGTTGGTATTTGTTGGCATGTCTTTACGGACATATCTGGATGCAGCCTGGAAAGATGGGAAGGCACCAATTGATCCATCAACCTTGGTAAAAGTGGAGGACATTGATGCCTATGCTCCAAAAGATCTATTAATTGTCACAACTGGCTCACAAGCAGAACCACGTGCTGCGCTAAATCTTGCATCTTATGGAAGTAGTCACTCTCTCAAACTGAGCAAGGAAGACATGATTTTGTATTCGGCCAAGGTGATACCTGGTAACGAATCCAGAGTGATGAAAATGTTGAACCGTATATCAGAGATCGGATCAAATATAATAATGGGCAAGAACGAGTTGCTGCACACATCTGGTCACGGATACCGTGGAGAATTAGAGGAAGTACTTCAAATTGTAAAGCCGCAACACTTTTTACCCATTCATGGGGAGCTTTTATTCCTCAAGGAGCATGAACTGCTGGGTCGGTCGACAGGCATTCGGCACACAACTGTTATAAAAAATGGAGAAATGCTTGGAGTTTCTCATCTAAGAAACAGAAGAGTTTTATCCAACGGTTTCACCTCTCTTGGGAGGGAGAATTTACAGTTGAAGTATAGTGATGGTGACAAAGCATTTGGATCCTCATCTGAGCTTTTCGTTGATGAGAGACTAAAGATTGCAACAGATGGCATTATAGTAGTCAGTATGGAAATTTTGCGACCTCAAAGTGTAGATGGTTTAAATGGGACTGGCATTAAAGGAAAGCTAAGGATCACTACTCGATGTTTATGGCTTGACAAGGGGAAGCTTTTAGATGCACTTCATAAAGCTGCTCATGCAGCACTTTCAAGCTGCCCGGTGAATTGTCCTCTAGCTCACATGGAAAGAACTGTGTCTGAGCTTCTGAGGAAGATGGTTAGAAAGTACAGTGGTAAGAGGCCTGAAGTCATAGTCATGGCTGTGGAGAGCCCTGGAGGAGTTCTATCCGAAGAGCTTGGAGCAAGGCTTTCAGGCAAGTCCTATAGTGGATTTGGGATGTCAGCATCGCGAAAAGCAGTTGATGAACAACCAACTAAGAGCCACTTAAACAGTATAAGACCAGATGGAAATAACGATTTGCCTTCTGAGGATAACTCAAGTCAGGAGTCTCAAGGTTATCATTTGGAATCTGAAAGACTACTTCCTGAAGAGGACTATGACACCACGAACTTGAACTTGACAGAGACACAATCCTTTGATAACGAGGGTTTGGAGGATTTCTGGAAACCATTTATCACGCCATCCTCTCCTGCCAACGAATTGGCGAAGGATCACGAAGGTTCTGTTCAACATTTAAAAAATGCGTTGGAGATTTCAAACGAACGTGAAGAAGTCAGTGATGACAAGTCACTGAAAACATCAAATTCTGATGTGAACTCTTCAAAGCCTGTGAAACGCAATAAATGGAAACCTGAGGAGATCAAGAAACTTATTAAATTGCGGGGGCAATTGCATGCCAGGTTTCAAGTGACCAGGGGACGAATGGCATTGTGGGAAGAGATATCCAATGGTATGTTGGCTGATGGTATTAATCGGAGTCCCGGACAGTGCAAATCTCTTTGGACATCTCTGGTTCAGAAATTTGAGCAGGAAAGCAAAAGTGAAAAGAAAAGCAAGAAGAGTTGGCCATACTTGGAGGAAATGAGCGGCATATTATCTGATTCAGAGGCAGTGGCAACAAAATGA
Protein Sequence:
- >MELO3C026230P1|Cucumis_melo|Trihelix|MELO3C026230P1
MQLEFLGGSSILGSSHSAPYKQRMASFGALSLCPCSPLLRPHHPVRTIYCCHGSPTVLGKNVSKVPRKRPGRLEGAKRSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDHDELGVQKIIPDTTFIKRWSHKIEAVVITHGHEDHIGALPWVIPALDSHTPIYASSFTVELIKKRLKENGIFVPSRLKVFKMRKRFTAGPFEIEPIRVTHSIPDCCGLVLRCTDGTILHTGDWKIDESPLDGKVFDRETLEQLSKEGVTLMMSDSTNVLSPGRTISESVVADALLRRISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSLKLSKEDMILYSAKVIPGNESRVMKMLNRISEIGSNIIMGKNELLHTSGHGYRGELEEVLQIVKPQHFLPIHGELLFLKEHELLGRSTGIRHTTVIKNGEMLGVSHLRNRRVLSNGFTSLGRENLQLKYSDGDKAFGSSSELFVDERLKIATDGIIVVSMEILRPQSVDGLNGTGIKGKLRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLAHMERTVSELLRKMVRKYSGKRPEVIVMAVESPGGVLSEELGARLSGKSYSGFGMSASRKAVDEQPTKSHLNSIRPDGNNDLPSEDNSSQESQGYHLESERLLPEEDYDTTNLNLTETQSFDNEGLEDFWKPFITPSSPANELAKDHEGSVQHLKNALEISNEREEVSDDKSLKTSNSDVNSSKPVKRNKWKPEEIKKLIKLRGQLHARFQVTRGRMALWEEISNGMLADGINRSPGQCKSLWTSLVQKFEQESKSEKKSKKSWPYLEEMSGILSDSEAVATK*