Information report for MDP0000313526
Gene Details
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Functional Annotation
- Refseq: XP_008392826.2 — ribonuclease J-like isoform X1
- Swissprot: Q84W56 — RNJ_ARATH; Ribonuclease J
- TrEMBL: A0A498I1Y3 — A0A498I1Y3_MALDO; Uncharacterized protein
- STRING: XP_008392826.1 — (Malus domestica)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Fragaria vesca: mrna06360.1-v1.0-hybrid
- Gossypium hirsutum: Gh_A03G0459, Gh_D03G1080, Gh_D07G0523
- Populus trichocarpa: Potri.012G095800.1
- Prunus mume: XP_008239449.1, XP_016651115.1, XP_016651116.1
- Prunus persica: Prupe.5G152800.1.p, Prupe.5G152800.3.p, Prupe.5G152800.2.p
- Pyrus bretschneideri: Pbr036910.1, Pbr017747.1, Pbr017741.1, Pbr041014.1
- Ricinus communis: 30147.m014528
- Vitis vinifera: GSVIVT01008515001
- Ziziphus jujuba: XP_015881808.1
Sequences
CDS Sequence:
- >MDP0000313526|Malus_domestica|Trihelix|MDP0000313526
ATGGCCGCTCTCGGAGCTCTTTCTCCCTGTCCCTACAGCCTCCTGTGGCGGCCGAAAACCTCGAACCGCTGCGTTTCGTRCTCCGTGGGCTCTTCTACTGCTACAGGAACACGTAGGTCGAATGTAAGAAGATCAGGAAGAATGGAAGGGCCTCGGAAAAGTATGGAAGACTCTGTTCAACGAAAGATGGAACAATTTTATGAAGGGAGAGAGGGCCCGCCAATCCGTGTTTTACCAATTGGTGGCCTTGGAGAAATTGGGATGAATTGCATGCTGGTCGGGAATTATGATCGCTACATTCTGATTGATGCTGGTGTCATGTTTCCGGAGTATGTGAACTTTGATGAGCTTGGAGTCCAAAAGATTATACCTGATACCACATTTATCAAAAAATGGAGCCACAAAATTGAAGCAATTGTTATTACACATGGGCACGAAGACCACATTGGTGCGTTGCCTTGGGTGATCCCAGCTTTGGATCCCAATACACCAATATTTGCATCATCCTTTACCATGGAGCTTATCAAAAAACGTCTGAAGGAACACGGGATCTTTGTTCCATCTAGACTTAGGACATTTAGAACAAAGAGGAAATTTACGGCTGGACCATTTGAGATTGAGCCTGTTCGGGTGACACATTCTATTCCTGACTGTTGTGGATTAGTTCTTCGCTGTTCTGATGGGACAATTCTTCACACTGGGGACTGGAAGATTGACGAATCACCATTGGATGGTAGAGGTTTTGACCGCGAAGCCTTGGAAGAACTTTCAAAAGAAGGAGTAACATTGATGATGAGTGACTCTACAAACGTACTCTCACCTGGAAGGACGACAAGTGAATCTTCYGTGGCAGATGCGCTGTTGAAGCATATTTCAGCTGCGAAAGGGAGGGTTATTACTACTCAGTTTGCTTCAAACATACACCGACTTGGAAGCGTGAAAGCTGCTGCTGATTTCACTGGCAGAAAGTTGGTATTTGTTGGTATGTCCTTAAGGACATATCTTGATGCAGCYTGGAAGGATGGGAAGGCACCAATTGATCCATCATCCTTGGTGAAAGTGGAAGATATTGATTCCTATGCCCCAAAGGATTTGCTGATTGTCACAACTGGCTCTCAAGCAGAACCACGTGCTGCTCTAAATCTTGCATCATTCGGAAGTAGTCATTCCGTCAAACTGAACAAAGAGGACATAATTTTGTATTCAGCTAAGGTAATTCCTGGTAATGAATCTAGGGTAATGAAAATGTTAAACCGCATATCAGATCTTGGGTCAACTATAGTGATGGGTAAGAATGAGGGGCTGCACACTTCTGGTCATGGGTATCGTGGAGAATTGGAAGAAGTCCTTCAAATTGTGAAGCCGCAACATTTTCTGCCCATACATGGAGAACTCTTGTTTCTCAAAGAGCATGAATTGCTTGGGAGATCAACTGGCATTCATCACACCACTGTTATAAAAAACGGGGAAATGCTTGGGGTTTCTCATTTAMGAAACAGAAGAGTACTTTCCAATGGTTTCACTTTGCTTGGAAAAGAGAATTTGCAGTTGAAGTTTAGCGACGGCGATAAAGCATTTGGCACATCAAGCGACCTTTGTGTTGACGAGAGACTAAGAATTGCCTTAGATGGCATAATAGTGGTCAGCATGGAAGTTTTACGCCCTCAAAATGTAAATGGTTCGACTGAAAATAGCATAAAAGGGAAGATAAAAATTACTACTCGATGTTTATGGCTTGACAAAGGAAAGCTTATTGATGCACTCTACAAAGCTGCCCATTCTGCACTATCAAGCTGCCCCATAAGTTGTCCTCTTCCTCACATGGAAAGAACAGTGTCTGAGGTATTGAGGAAATTGGTAAGAAAGTACAGTGGTAAAAGGCCAGACGTCATTGCCATTGCCATGGAGAACCCTGCAGCAGTTCATGCTGATGAGGTCAGTGCAAGACTATCTGGAAAATCTTATGTTGGTTCAGAGGTGTCACAGTTGAGGAAAGTATATGATCAACATCAAATTAAGAGTCCGTCAACTAGGACACAAGCAGATGATTGCAAGGCCAAAACACATTTTCCGAGTCAGTCAACTACAACACAAGCAGATGAAGGCAAGGACAACACATTGCAGAGCTTCTCTCAACAAGATACTGAAGAGTCCGTACTTGAAGATGATGGCATTGAAGTCGAAGGACTCCTGCCTGAGGAAGATTCTGCCACTTCAAGTTCCAAGCCAGAGAAGCTTTCTTCTGATTCAGAGGATTTTTTGAACGCAATGGTTAGRTTATCAACTGGTGACAAATCAGTAGAAGATGAAAATGGTCTGGTTGCAGAACAGGAAAATCCACAGAAAGATGGTCCTGAAAGCAGTGAAATACCAAATCTTTCAAAGCCCGTGAAGCGCAATAAATGGAAGACTGACGAAGTTCAGAAGCTTATTACAATGCGSGGGAAACTGCGTAGCAGATTTCAAGTTGTGAAGGGTAGAATGGCCCTCTGGGAAGAGATATCTAGRAACTTGTTGGCCGATGGGATCAACCGAAGCCCAGGACAATGCAAATCTCTGTGGGCATCCCTGGTTCAGAAATATGAGGAAAGCAAGAGCGGAAAAAGAAGTCGAAAGAGTTGGCCATACTTTGAGGAAATGGATGSAGCTYTGTCTGATTCCRAGGAATTGGCAACAAAATGA
Protein Sequence:
- >MDP0000313526|Malus_domestica|Trihelix|MDP0000313526
MAALGALSPCPYSLLWRPKTSNRCVSXSVGSSTATGTRRSNVRRSGRMEGPRKSMEDSVQRKMEQFYEGREGPPIRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPEYVNFDELGVQKIIPDTTFIKKWSHKIEAIVITHGHEDHIGALPWVIPALDPNTPIFASSFTMELIKKRLKEHGIFVPSRLRTFRTKRKFTAGPFEIEPVRVTHSIPDCCGLVLRCSDGTILHTGDWKIDESPLDGRGFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESSVADALLKHISAAKGRVITTQFASNIHRLGSVKAAADFTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSSLVKVEDIDSYAPKDLLIVTTGSQAEPRAALNLASFGSSHSVKLNKEDIILYSAKVIPGNESRVMKMLNRISDLGSTIVMGKNEGLHTSGHGYRGELEEVLQIVKPQHFLPIHGELLFLKEHELLGRSTGIHHTTVIKNGEMLGVSHLXNRRVLSNGFTLLGKENLQLKFSDGDKAFGTSSDLCVDERLRIALDGIIVVSMEVLRPQNVNGSTENSIKGKIKITTRCLWLDKGKLIDALYKAAHSALSSCPISCPLPHMERTVSEVLRKLVRKYSGKRPDVIAIAMENPAAVHADEVSARLSGKSYVGSEVSQLRKVYDQHQIKSPSTRTQADDCKAKTHFPSQSTTTQADEGKDNTLQSFSQQDTEESVLEDDGIEVEGLLPEEDSATSSSKPEKLSSDSEDFLNAMVRLSTGDKSVEDENGLVAEQENPQKDGPESSEIPNLSKPVKRNKWKTDEVQKLITMRGKLRSRFQVVKGRMALWEEISRNLLADGINRSPGQCKSLWASLVQKYEESKSGKRSRKSWPYFEEMDXAXSDSXELATK