Information report for MDP0000267218
Gene Details
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Functional Annotation
- Refseq: XP_028957706.1 — trihelix transcription factor GT-2-like
- Swissprot: Q39117 — TGT2_ARATH; Trihelix transcription factor GT-2
- TrEMBL: A0A498JY46 — A0A498JY46_MALDO; Uncharacterized protein
- STRING: XP_009368514.1 — (Pyrus x bretschneideri)
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Cicer arietinum: XP_004496473.1
- Fragaria vesca: mrna08173.1-v1.0-hybrid
- Glycine max: Glyma.16G167500.1.p, Glyma.20G166600.1.p
- Juglans regia: WALNUT_00012588-RA, WALNUT_00024662-RA
- Lotus japonicus: Lj0g3v0303659.1
- Manihot esculenta: Manes.18G091700.1.p, Manes.02G179200.1.p
- Populus trichocarpa: Potri.002G068400.1, Potri.005G192000.1
- Prunus mume: XP_008237582.1
- Prunus persica: Prupe.8G028800.1.p, Prupe.8G028800.2.p
- Pyrus bretschneideri: Pbr010535.1, Pbr036349.1
- Ricinus communis: 29576.m000223
- Solanum lycopersicum: Solyc12g056510.1.1
Sequences
CDS Sequence:
- >MDP0000267218|Malus_domestica|Trihelix|MDP0000267218
ATGCCTGCGGTTCCTGCGGCTGTGCCTGACAAATCATCAACTATGTTCCCATCTGGCGGGAGCTCCGGTGTCGAAGCGGCCCACACGGCAGAAGTGGTTCCTGAAGGAAGTCATGAATCCAAAACGACAAACGTGCTGTCAAATTCAGTTCAAGAGGAAAACAAGGGTGACCGGAACTTATCTGGAGGAAAGCGGTGGCCTCGACAAGAAACGGTGGCGCTTCTGAAGATACGGTCTCAAATGGATGACGCTTTTCGCGACTCAAGTCTCAAAGCTCCATTGTGGGAAGATGTTTCAAGAAAGCTAGGTGAGCTTGGTTATTACCGAAGCGCTAAGAAATGCAAGGAGAAATTCGAGAACGTGTATAAGTACCACAGGAGAACCAAAGAAGGCCGATCTGGAAAACAAGAAGGAAAAACATATCGATTTTTCGATGAACTTGAAGCTTTCGCTCATCAAAATCATCATCATCCATCAACAATACAACCAAAACCTCAAGTAGTACTGTGGCCAACCATGAACAACAACCATCCAAACAACCCTAGTCTTGTAGTTCCTCATGTCACCATTACTACTCTTCCTCCTTCTTCAACACCAAGCATCCTGACCCCAACCAGTGGCTCTCTTCCAAATGGTCCTCAAATTTCACCACCACACATTACAATATCACCTCTCAATCTCTCTCATCAGAATATTAATGGGTTCAAGCCAAACTTGGCAACAAACAATCTTTTTTCGAGTTCTACTTCCTCGACTGCCTCCGACGAAGAGTTTCAAGTTCAACCGCGCAACAAGAGAAAAAGGAAGTGGAAGTACTTCTTCAGAAGGCTGACCAAGGACGTGCTGGAGAAGCAAGAAAGTCTGCAGGAGAAATTCTTGGAAGCAATAGCAAAATGCGAGCACCAACGAATGGCGAGAGAAGAAGCTTGGAGGATGGAAGAGATGGCGAGGATGAGTAAAGAACACGAAATTTTAGCCAAAGAAAGATCGTTAGCAGCAGCAAAAGATGCCGCGGTTATTGAATTCTTGCACAAGGTTTCGGGACAACAAAATTTGACGAATATGCAAGCACTTGAGGCACCATCATCCCAGCCTCAGCCAATGTCAGTACTAATGCCACCACCGCTGCCAGCTCCGGTGGCAGTGACCAGAAGTAGTAATTTTGAGGTTCCGAAACTGAATAAGGGTGAAAGTCCATTTCCTGCAGGGTCCACAAGATGGCCAAGAGTTGAAGTTGAAGCTTTGATAAACTTGAGGACATGTCTTGACGTGAAGTACCAAGAAGCCGGGCCTAAAGGATCTCTTTGGGAGGAGATATCGGTGGGGATGAAGCGGCTCGGATACAATAGGAGTGCAAAGAGGTGCAAAGAGAAGTGGGAGAACATCAACAAGTACTACAAGAAGGTGAAGGAAAGCAGCAAAACACGCTCTGAGGATTCAAAAAACATTAAAAAGAACAATAAGAATGCTGCTAGTTATGTGGAGAAGCCCATTGCTGAAACAATGCAGCCGTTGATCAAGGTCCAGCCAGACCAGCCGGTGATTGAAGATATTGAAAGGGAAAACGGGGAGCGAAATGGAGACGACGAAGATGGAGAGAGTACAGAGGAAGAAGATCGGAGTGATGACCAGATGGAGATGAAAGGCTCTATGTCAATCTCTGAATACCAGCAGCAAATCAAAGAAATTTCTAATTCCTTGATTACTGCTGGAGCTTCGGTTACTGATCGTGATTTAATTGCTGCTACACTGGCTAGCTTGCTTGATGACTTTGAGTCGTCTATCGACTCCATTATGTTGTGTTTTTCTTCCACAAAACTTAATGAATTGCATGGCTTCTTAGGCTCTTCTTTTCCTACACCACAAGTGTATGCTGCTCAATATCTTGAGTCACAGCCCTTTGTGAAGCAATATCGTGGTAATCGAGGCCACAACTCCAACACTCATGGTCACAACTATCCTCATCTTGGTAGTCATGGTTCTAATCATTCCAACCACCATGGCAATAATTCTGGTTATCACTCTTTCAATCAATCTGGTTATTGTGTACAATGTCAAATATGTGGTTCCACTAGTCATGAGGCCATTGATTGCTATGATCGTATTAAGATATCCTAA
Protein Sequence:
- >MDP0000267218|Malus_domestica|Trihelix|MDP0000267218
MPAVPAAVPDKSSTMFPSGGSSGVEAAHTAEVVPEGSHESKTTNVLSNSVQEENKGDRNLSGGKRWPRQETVALLKIRSQMDDAFRDSSLKAPLWEDVSRKLGELGYYRSAKKCKEKFENVYKYHRRTKEGRSGKQEGKTYRFFDELEAFAHQNHHHPSTIQPKPQVVLWPTMNNNHPNNPSLVVPHVTITTLPPSSTPSILTPTSGSLPNGPQISPPHITISPLNLSHQNINGFKPNLATNNLFSSSTSSTASDEEFQVQPRNKRKRKWKYFFRRLTKDVLEKQESLQEKFLEAIAKCEHQRMAREEAWRMEEMARMSKEHEILAKERSLAAAKDAAVIEFLHKVSGQQNLTNMQALEAPSSQPQPMSVLMPPPLPAPVAVTRSSNFEVPKLNKGESPFPAGSTRWPRVEVEALINLRTCLDVKYQEAGPKGSLWEEISVGMKRLGYNRSAKRCKEKWENINKYYKKVKESSKTRSEDSKNIKKNNKNAASYVEKPIAETMQPLIKVQPDQPVIEDIERENGERNGDDEDGESTEEEDRSDDQMEMKGSMSISEYQQQIKEISNSLITAGASVTDRDLIAATLASLLDDFESSIDSIMLCFSSTKLNELHGFLGSSFPTPQVYAAQYLESQPFVKQYRGNRGHNSNTHGHNYPHLGSHGSNHSNHHGNNSGYHSFNQSGYCVQCQICGSTSHEAIDCYDRIKIS