Information report for MDP0000129923
Gene Details
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Functional Annotation
- Refseq: XP_008376999.1 — uncharacterized protein LOC103440096
- TrEMBL: A0A498JHC8 — A0A498JHC8_MALDO; Uncharacterized protein
- STRING: XP_008376999.1 — (Malus domestica)
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Actinidia chinensis: Achn354421
- Capsicum annuum: CA03g16650
- Citrus sinensis: orange1.1g001741m
- Fragaria vesca: mrna13363.1-v1.0-hybrid
- Manihot esculenta: Manes.06G140900.1.p
- Nicotiana tabacum: XP_016458260.1
- Petunia inflata: Peinf101Scf01452g04008.1
- Populus trichocarpa: Potri.012G132300.1
- Prunus mume: XP_016649806.1
- Prunus persica: Prupe.2G286400.1.p
- Ricinus communis: 30147.m014143
- Solanum melongena: Sme2.5_03635.1_g00005.1
- Vitis vinifera: GSVIVT01018456001
- Ziziphus jujuba: XP_015877983.1
Sequences
CDS Sequence:
- >MDP0000129923|Malus_domestica|Trihelix|MDP0000129923
ATGGGTGACAAAAAAGGAGAAACAACCAAGAAAAACCCACAACAACCTCAGCAGCAGCAGCAGCAGCAACAGATTTCACCTTCTCCCAACGACCAACAACCGCCGCCAACGGCTGTTAATATCAGTGGAGCTGCAGCTGCAGCTGGTGTCTCCTTCAATATTCCTCCTCCTTTGTTTGTCCCTACCGGTACTCCAACAACCTCATCGTCATCTCCCTTCGATCAGCATCAATTTGAGGCAGCTGTGAATCCAAAGAGGCCAAGATTTACAAGTACAACCGGACAATGGAAACTTCTTCCTTCTCCATCTTCCCAACAGAAACAACCCCAAATACCAATTCTACCCTCAGAATCAAACCCATCTCGATCTCCAAATCCAAAAAATACTCAATTATCTCAACCCCATGTCTCCACCACCAGAGCAGCCTCCTCCTCCGACACCGCCTCGTCGTGGCCGCCGCACTCTCCTCTACCGTCTCTATCAGCAACATCAGGGCACGACACAAACAAGACAGAGGAAGGAGACCCTCAAAACCCGGTTCACCACCACCAGCAGTTCAGAAAAGGAAAGTATGTGAGTCCGGTTTGGAAACCAAACGAGATGCTATGGCTGGCTAGGGGATGGAGGATTCAGTACCAAGGTGGGGCAGCCCGTGGATCTTCGGATCATGGGTCGGGCTCATCTTCAAGAGCAGAGCAGTTACAAACAGAGACAGGCGGCGCCACCACCACTACTCACACCAGAAACAAAACGAGGGCTGACAAGGACAGGGAAGTCGCCGACTTCCTTCAGAAGCATGGCGTCAACAGGGACGCGAAAACGGCGGGAACCAAGTGGGATAACATGCTGGGAGAGTTTAGAAAGGTTTATGAATGGGAGAGAGGTTCCGAGAGAGAACAAGTTGGAAAGAGTTACTTTAGGCTTTCACCGTACGAGAGAAAGCTTCATAGGTTGCCTGCTTCTTTTGATGAGGAGGTTTTCGAGGAGCTCTCGCAGTTCATGGGGTCGAGGATGAGGACTACTCAGAGCAGATTAGGGTCGGTTGGGGACGACAGTCGATCGGCTCTTGTTATGACAAGAAGTCTTCCCCAACCGCCTTCGTTCAAAGAAGACGACTTCCCTCTCTCAGGTAGGGGAAAGCAACTAATGATCATGAGCGGTGGAGGGGAACCGTTTTACCACGGAGGAAGAGGGACCTTGCTAGGGTTTCCTCATCATGATCAGTCTTCCCTAGACTTTGCAACTGGCCTCTCTTCATCTTCTTCCAAGGAGCTCCGTCGAATCGGAAAGATTCGAATGACGTGGGAAGAATCGGTGAGTCTGTGGGCGGAAGAAGGGGAGCACCACAGAGGGAGACTGAGGCTACAAGGCTCGAGCTTCTTGAATGCCGACGAGCTCACTTTCTTTGATGATTCCATGGTTGCTTGCACCATGGAAGCCTTCGAAGATGGCCCCTTTCGAGGCTTCTCCGTTGACCGATTTGTGTCCGGACAACAAGTCAAAGTCTTTGGTAGAAGAAGACCTTCATCCGCTACTTCTGGGTTCAATGAAAAAGTCCAGCTTCCCTTGCCAGAATCCTCATCAAGATCAATGCCTCCATTTGAATTTCAAGACCCAACGGAGTACTACGTGGGGTGTCTTCGAGTCCCACCGCCATCACTTCCTACATTATCCGAGCTTCAATGGTACGTACAAGAGCCACCGCCGGAGGAACTCCGTTTCCCACTCCGAAAAGACTTGTACCGCGACTTACCACAAGGGAAAGAGATCTTCTTCACCACCTCAACCGAATTGCTAGACTGTAGAGCCATCACATACGATATTCTAAGCCCCATAATCCGAACCAATCCAAGTCTTAGTGCTGCCACTGCCACTGCCACAAGTAGAGACTCCTTCATTCCCATTTGGGACGACTGCATCAACCGAATCGTCTCCAAATTTTGTTCAGTGGAAATGGTCTTCATCCGCAAGCCTAACGCTTCATCCCCAACTGAACCATTACAGGATCAATGGCCGAACGTGACAGGCTTCGTTCGAAATTTCTGTCTATGGAGAGGGGAAGAAGCCGATAATTTAAGAGATGACCGGGACATTAATCCGTCAAGCTCAATAGTTGAGAAACTTTTGTGGACTTACATGGATCTTCCTTACATATTAGGGTACTACGCAATCGGTCATGTTGTAACCTTCTGTGCATTGAGTCGGGTTCAAGATCGAATAATTCGCACTGATTTAGGAACCGTTGATCTGTCATCGACCTCTGAGAGACTGAAAGCCCTAGTCCCATGTTTCAGGATTGCAAGCCTATTGCCATTGCTAGCGGATCGATGCTTCAACATTAGTAGTAATTGCAATGGTGGTTCTTACAAAATGCCACCTTATAGCGATTTCGAGAGGATCGACATGGGGAGCGGAAACGCAATTGAAATGACGCCAACCACAGTGACTCGATTTTACAGTAACATTCGGAAGGCGACCGCCGTAAAGGAAATCTACGATTTTCTCGACCAGAGAATTCCCCATGCAGAGTACATCCACAGATCGTTGGAGAAAGGTTGGGCTTTGGTGTTTAAGCCTAGAGGGTGCAAGTTCAAGCCTACAAATTGCGACCAGCTCGTTGAGGCTCTCATGTACGTGACAAAAGCGCTGGTGGCATTGCACGACTTGTCGTTTATGCATAGGGATATATGTTGGGAGAAAGTGATGAGGAATGAGAGGGACAACGAGTGGTTTGTTTGCGGGTTCGAGGAGGCTGTCGGGGCTCCGCAGATATACCCGCACAGTGTGGGGATGGCTGGAGATGCGGTGGCGCGTGGGAGGCACGCGCCGGAGATGGAGAGAGGGTTGCATGGGGTGAAGGTGGACGTGTGGGGAGTAGGGAATCTGGTGAGGAGTTGCGGGTTGACAGGTGTGCCGAAGTTGCTGAGGGAGCTCCAAAACCGGTGTTTGGATCAGAACCCGGAGAAGAGGCCAACTGCAGCCGACTGTTACCACCACCTGCTGCAGCTGCAGTCGTCTCTGTAG
Protein Sequence:
- >MDP0000129923|Malus_domestica|Trihelix|MDP0000129923
MGDKKGETTKKNPQQPQQQQQQQQISPSPNDQQPPPTAVNISGAAAAAGVSFNIPPPLFVPTGTPTTSSSSPFDQHQFEAAVNPKRPRFTSTTGQWKLLPSPSSQQKQPQIPILPSESNPSRSPNPKNTQLSQPHVSTTRAASSSDTASSWPPHSPLPSLSATSGHDTNKTEEGDPQNPVHHHQQFRKGKYVSPVWKPNEMLWLARGWRIQYQGGAARGSSDHGSGSSSRAEQLQTETGGATTTTHTRNKTRADKDREVADFLQKHGVNRDAKTAGTKWDNMLGEFRKVYEWERGSEREQVGKSYFRLSPYERKLHRLPASFDEEVFEELSQFMGSRMRTTQSRLGSVGDDSRSALVMTRSLPQPPSFKEDDFPLSGRGKQLMIMSGGGEPFYHGGRGTLLGFPHHDQSSLDFATGLSSSSSKELRRIGKIRMTWEESVSLWAEEGEHHRGRLRLQGSSFLNADELTFFDDSMVACTMEAFEDGPFRGFSVDRFVSGQQVKVFGRRRPSSATSGFNEKVQLPLPESSSRSMPPFEFQDPTEYYVGCLRVPPPSLPTLSELQWYVQEPPPEELRFPLRKDLYRDLPQGKEIFFTTSTELLDCRAITYDILSPIIRTNPSLSAATATATSRDSFIPIWDDCINRIVSKFCSVEMVFIRKPNASSPTEPLQDQWPNVTGFVRNFCLWRGEEADNLRDDRDINPSSSIVEKLLWTYMDLPYILGYYAIGHVVTFCALSRVQDRIIRTDLGTVDLSSTSERLKALVPCFRIASLLPLLADRCFNISSNCNGGSYKMPPYSDFERIDMGSGNAIEMTPTTVTRFYSNIRKATAVKEIYDFLDQRIPHAEYIHRSLEKGWALVFKPRGCKFKPTNCDQLVEALMYVTKALVALHDLSFMHRDICWEKVMRNERDNEWFVCGFEEAVGAPQIYPHSVGMAGDAVARGRHAPEMERGLHGVKVDVWGVGNLVRSCGLTGVPKLLRELQNRCLDQNPEKRPTAADCYHHLLQLQSSL