Information report for Lus10020652
Gene Details
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Functional Annotation
- Refseq: XP_021673659.1 — pentatricopeptide repeat-containing protein At2g22070-like
- TrEMBL: A0A067JVN4 — A0A067JVN4_JATCU; Uncharacterized protein
- TrEMBL: A0A2C9USG8 — A0A2C9USG8_MANES; Uncharacterized protein
- STRING: Lus10020652 — (Linum usitatissimum)
- GO:0005515 — Molecular Function — protein binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Sequences
CDS Sequence:
- >Lus10020652|Linum_usitatissimum|Trihelix|Lus10020652
ATGGACGACGTCGGCGAGATCCAGTCACCTGTTTCATCCTCTCCGTCCGACGGAAGAATCTCCGTTGCCGTCGACGACGCCGCCGCCGATGCGGCCGCTGTTCTCACCCTCCCTCCCCCTTCCTCCCCGAAAGAGCCTGCTCCTGACGCTAGCAATGCTCTCGCTCGGACGAACAACACCGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGAGGACTGTTGGAGCGAAGGAGCGACGGCGGTGTTGATAGAGGCGTGGGGGGAGAGGCACGTGGAGCTGAGCAGAGGCAATTTGAAGCACAACCACTGGAAGGAAGTCGCCGACATCGTCGCCAGCCGCGAAGGCTGGGCCAAACCGCCCAAGACCGACATTCAGTGCAAAAATCGGATCGACACCGTGAAGAAGAAGTACAAATCCGAGAGAGCCAAAATCGACGCCGGCAACGGTCCTAGCAAGATGCCTTTGCAGCAGCGTCGCTGGTACCAACATCATCCTGTAGCATTTGGCCAGGTTAAACCGGAAGCCTTTCATGCTCGGGCTGTTAAAGGCGGTCCCTTGTGTTGCAATCTCGATGCTTCGTGCAACTATCTTCTGAAACTGTACTCCATGTATGCTGATTTGAATGATGCACGCAAGTTGTTCTACGAGATTCTTAACAAGGACGTGCGGACATGGACTATTCTGATATCCAGTTTTGCTCGAAATGGAGCAGACTCGGCTGTTTTGAATCTCTGTCGGAATATGCAAGTGGATGGTGTTAAACCAAATCAGTTCACTTTATCAGCTGTTTTGAAGTCATGCTCTAGCTTGTATGAGCTGAAGAGCGGGAAAGCTGTCCATGGTTGGATATGGAGAAACGAGATCGCCTTCGATGTTGTGCTGGAGAACTCTGTCCTTGATCTTTATGTTAAATGCAGGGCTTTGAGCTCTGCTGAGAAGTTGTTTGGGAAAATGGAGGATAAAGATACGGTTTCGTGGAATATAATGATGGGTGCATATCTGCATCTTGGCGATACAAGAAAGTCGCTTGAGTTCTTCGATAGTATGAAGTCGAAAGATGTTGTGAGCTGGAACACCATGATCGATGGGCTAATCAGCTGTGACTGTGGAACCGCTGCCTTGGAAGTGCTTTATAGGATGGTCGCTGATGGACCCAATTTCAATGCAGTAACTTTCTCTACGGCATTGAATTTAGTTTCCTGCTTATCTGTTTTACAGCCTGGAAAGGAAATTCATGGGATGGTTATCAGGCTTCGGTTACATAATCAGGGCTTCATAATGAGTTCGCTTGTAGATATGTATTGTAAATGTGGGGAGATGAGATTGGCTGCCACCATTTTTGACAAAATGTGTTTGAAATCTCCAGCAAGGAGATTCTCCTGGAGTTCTATGGTTTCTGGATACGTTCGAAATGGTGAGTACACTCATGCTTTCGAAACTGTGAAGTATATGTTCAAGGAAGACGACGTTGAGGTGGACATTTATACGCTCACAAGCGTCGTTTCTGGTTGTGCTGCGACTAGCAATTCGGAGGTCGGCAGACAGATCGATGCACATGTTCAGAAGGTAGGCCACAAAGTCGATCCCCATTTGGTTTCATCGTTTATTGATATGTACACCAAATGCGGTTGTTTGAACGACGCGTGGAAGAAGTTCGACGAAAGTAATTGCGACACCAATGTTGTAATCTGGACTTCTATGATATCTGGATTTGCTTTACATGGACAAGGCAAGGAGGCTGTTGAACTCTTTGAGCTCATGTTAAGAAAGGGCATTGCTCCGAATCATATTACGTTTCTTGCTGTTATGAATGCATGTAGCCATGCTGGGTTGTTTGAAGAAGGTAGCATATATTTTAAGTTAATGCAGACAGTTTACGGCTTGGAGCCGATGATTGAGCAATACACTGCTATGGTTGATCTATTCGGTCGAGCAGGTCGCTTGAACGAGGCAAAAGGATTCATCTTGGAGAACGGTATCTCACATCTGACAGTAGTCTGGAAGTCGCTTCTGTCATCTTGTAGGCTCCATAAAAATGTTGAGGTGGGGAAATGGGTGTGTGAAAGACTGATGGAATTGGAGCCGCTCGATACGAGTTGTTACGTTCTTTTGTCGAACATACTTTCTGCTGATGATCATTGGGAGGAGGCTGCCAAAGCTAGGACCTTGATGTTCCAGAGATCAGTTACCAAACTCCCTGGTCAGTCTTGGATCTAG
Protein Sequence:
- >Lus10020652|Linum_usitatissimum|Trihelix|Lus10020652
MDDVGEIQSPVSSSPSDGRISVAVDDAAADAAAVLTLPPPSSPKEPAPDASNALARTNNTGGGGGGGGGGREDCWSEGATAVLIEAWGERHVELSRGNLKHNHWKEVADIVASREGWAKPPKTDIQCKNRIDTVKKKYKSERAKIDAGNGPSKMPLQQRRWYQHHPVAFGQVKPEAFHARAVKGGPLCCNLDASCNYLLKLYSMYADLNDARKLFYEILNKDVRTWTILISSFARNGADSAVLNLCRNMQVDGVKPNQFTLSAVLKSCSSLYELKSGKAVHGWIWRNEIAFDVVLENSVLDLYVKCRALSSAEKLFGKMEDKDTVSWNIMMGAYLHLGDTRKSLEFFDSMKSKDVVSWNTMIDGLISCDCGTAALEVLYRMVADGPNFNAVTFSTALNLVSCLSVLQPGKEIHGMVIRLRLHNQGFIMSSLVDMYCKCGEMRLAATIFDKMCLKSPARRFSWSSMVSGYVRNGEYTHAFETVKYMFKEDDVEVDIYTLTSVVSGCAATSNSEVGRQIDAHVQKVGHKVDPHLVSSFIDMYTKCGCLNDAWKKFDESNCDTNVVIWTSMISGFALHGQGKEAVELFELMLRKGIAPNHITFLAVMNACSHAGLFEEGSIYFKLMQTVYGLEPMIEQYTAMVDLFGRAGRLNEAKGFILENGISHLTVVWKSLLSSCRLHKNVEVGKWVCERLMELEPLDTSCYVLLSNILSADDHWEEAAKARTLMFQRSVTKLPGQSWI*