Information report for Lsa011476
Gene Details
Functional Annotation
- Refseq: XP_023731535.1 — uncharacterized protein LOC111879314
- Refseq: XP_023731536.1 — uncharacterized protein LOC111879314
- Swissprot: Q84W56 — RNJ_ARATH; Ribonuclease J
- TrEMBL: A0A2J6KKP1 — A0A2J6KKP1_LACSA; Uncharacterized protein
- STRING: XP_002511207.1 — (Ricinus communis)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Arabidopsis thaliana: AT5G63420.1
- Daucus carota: DCAR_016404
- Fragaria vesca: mrna06360.1-v1.0-hybrid
- Glycine max: Glyma.04G194600.1.p
- Manihot esculenta: Manes.14G052700.2.p, Manes.14G052700.1.p
- Prunus mume: XP_008239449.1, XP_016651115.1
- Prunus persica: Prupe.5G152800.1.p, Prupe.5G152800.3.p
- Ricinus communis: 30147.m014528
- Salvia miltiorrhiza: SMil_00013349-RA_Salv
- Sesamum indicum: XP_011073026.1, XP_011073024.1
Sequences
CDS Sequence:
- >Lsa011476|Lactuca_sativa|Trihelix|gnl|UG|Lsa#S58695685;PUT-187a-Lactuca_sativa-38733
ATGGAAATGGCTTCTTTCAGTGGTATATCACATTGTCATCATCACAGGCTATGGTGGCAACCGAATACTTCCAAGCTTCCAGTTTCTTGCTCTATGCCACCTCCTTCATTTACAGGTACTAGTCATGGATCTAAAGTTGGGTATAAGAGATCTGGAAGATTTGAAGGAGCTGGAAAGAGCATGGAAGATTCTGTGAAGAGAAAAATGGAGAAGTTTTATGAAGGGCAAAATGGTCCACCTCTTCGTGTTCTTCCAATTGGTGGTTTAGGAGAAATTGGAATGAATTGTATGCTTGTTGGGAATTTTGATCGGTATATTCTTATTGATGCTGGTGTCATGTTCCCAGACTATGAGGATCTTGGTGTTCAAAAAATTATACCTGATACAACATTTATAAAAAAATGGTCTCATAAAATTGAAGCAGTTGTTATAACACATGGGCATGAAGATCACATTGGTGCGTTGCCTTGGGTTATACCTGCTTTGGATTCACGTACTCCAATATTTTCATCAACCTTTACAATGGAGCTTATTAAGAAGAGATTGAAGGAATCAGGCATATTTGTGCCTTCAAGGCTTAAAACATTTAAAACAAAGAAGAAATTTATGGCTGGACCTTTTGAGATAGAGCCAATTAGGGTTACTCATTCGATTCCTGATTGTTCTGGATTAGTTCTTAGATGTTCTGATGGTGTTATTCTTCACACCGGGGACTGGAAGATTGATGAGTCACCATTGGATGGACAAGTTTTTGATCGTGAAGGTTTAGAACAGCTCTCAAAAGAAGGGGTAACTTTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGAAGGACACTTAGTGAAACCGTTGTAGCAAATTCACTACTAAGGAATATTTCAGCTGCAAAAGGAAGAGTAATAACCACTCAATTTTCATCAAATATTCATAGACTTGGAAGTGTTAAAGCTGCAGCTGATGCAACTGGAAGAAAGTTGGTATTTGTTGGGATGTCTTTGAGGACCTATCTTGATGCTGCATGGAAAGATGGAAAGGCACCAATTGATCCTTCAACTCTTGTGAAAGTTGAAGACATTGATGGTTATGCTCCAAAAGACTTGCTAATTGTTACTACTGGTTCTCAAGCAGAACCTCGTGCTGCACTTAACCTTGCATCATTTGGAAGCAGTCATTTTTTCAAATTGAGCAAAGAAGACTTAATTTTGTATTCTGCCAAGGTGATTCCTGGTAATGAATCTAGAGTGATGAAAATGATGAATCGATTATCTGAAATTGGGCCCACAATAGTCATGGGGAAAAATGAACAACTACACACATCTGGTCATGCCTATCGTGAAGAATTGGAAGAAGTGCTGAGGATTGTGAAACCACAACATTTTTTACCTATTCATGGGGAACTCTTATTCCTCAAAGAACATGAATTGCTTGGAAAATCCACTGGGATTCATCACACTGCTGTCATAAAGAATGGAGAAATGCTTGGGGTTTCTCATTTGAGGAACAGAAGAGTTTTGTCTAATGGTTTCATAGCCCTAGGAAAAGAAAATTTACAGTTGATGTACAGTGATGGTGACAAAGCATTTGGTACATCTGCTGATCTTTGTGTAGATGAAAGGATGAAAATTGCAACAGATGGAATAATAATTGTCAGCATTGAAATCATGCGTCCTCAATCAACCGAAAATACTGCATTACTGAAAGAAACAATTAAAGGAAAAATAAGAATAACTACACGTTGCTTATGGAATGACAATGGGAAGCTTCTAGATGCTCTTCATAGTGCTGCACATGCAGCCCTATCCAGCTGTCCAATAAAAAGCCCCTTACCTCATATGGAAAGAACTGTTTCTGAAGTTTTAAGGAAAATGGTAAGAAAATATAGTGGAAAAAGGCCTGAAGTCATCACACATGCTATTGAAAATCCTATTGCTGTTATTGCTGATGAAATTAGTGAAAAGTTATCTGGTGTGAATGTGAATGTGAAAGTCAACAATGGTTTTGAAATGCCTTTGGGGAAATCGGTTGATGGGAGTTTAAAAAAGAGAAAGTCAAGTAAGTTTCAAGAAGAAAAGAAAGATCTTGATAATGAAATTAAAGGAGATGAAGGATTGTTATCCGAGGAAGAAACCACCACATCTGTTTCCGACTCGACGGGAATCGCGGTTTCCGATTCCGATGAATTCTGGAAACCGTACACGGATTCCGATTCCGTTGAGCAATCGGAAAGTGATAGCAAGGATGATTCTGATTCTAGTAATACAAGCAAGAAGCCTCTGAAAAGAAACAGATGGAAACCAGAAGAGGTTAAAAAGCTTATAAAGTTTCGTGGTGAGTTGAATAGTAGATTCCAAGTTGTGAAGGGAAGAATGGCACTTTGGGAAGAAATATCCGGGAATCTTTCCACTCAGGGGTATAATCGAAGCCCTGGGCAATGTAAATCTTTATGGGCTTCATTGCTTCAAAAATACGAGGAAAGCAAGAAAGAATCTGAAAGCAAGAGAAGCTGGCAATATTATGAAGACATGGATAACATCTTCTCCACTTCTTCTGATGCTACTATGATAAACAAACAATGA
Protein Sequence:
- >Lsa011476|Lactuca_sativa|Trihelix|gnl|UG|Lsa#S58695685;PUT-187a-Lactuca_sativa-38733
MEMASFSGISHCHHHRLWWQPNTSKLPVSCSMPPPSFTGTSHGSKVGYKRSGRFEGAGKSMEDSVKRKMEKFYEGQNGPPLRVLPIGGLGEIGMNCMLVGNFDRYILIDAGVMFPDYEDLGVQKIIPDTTFIKKWSHKIEAVVITHGHEDHIGALPWVIPALDSRTPIFSSTFTMELIKKRLKESGIFVPSRLKTFKTKKKFMAGPFEIEPIRVTHSIPDCSGLVLRCSDGVILHTGDWKIDESPLDGQVFDREGLEQLSKEGVTLMMSDSTNVLSPGRTLSETVVANSLLRNISAAKGRVITTQFSSNIHRLGSVKAAADATGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDGYAPKDLLIVTTGSQAEPRAALNLASFGSSHFFKLSKEDLILYSAKVIPGNESRVMKMMNRLSEIGPTIVMGKNEQLHTSGHAYREELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIHHTAVIKNGEMLGVSHLRNRRVLSNGFIALGKENLQLMYSDGDKAFGTSADLCVDERMKIATDGIIIVSIEIMRPQSTENTALLKETIKGKIRITTRCLWNDNGKLLDALHSAAHAALSSCPIKSPLPHMERTVSEVLRKMVRKYSGKRPEVITHAIENPIAVIADEISEKLSGVNVNVKVNNGFEMPLGKSVDGSLKKRKSSKFQEEKKDLDNEIKGDEGLLSEEETTTSVSDSTGIAVSDSDEFWKPYTDSDSVEQSESDSKDDSDSSNTSKKPLKRNRWKPEEVKKLIKFRGELNSRFQVVKGRMALWEEISGNLSTQGYNRSPGQCKSLWASLLQKYEESKKESESKRSWQYYEDMDNIFSTSSDATMINKQ