Gene Details:
- Gene ID: LOC_Os01g21590.1
- Gene Name: B1153F04.11, P0028G04.35
- Gene Family: Trihelix Family
- Description: Trihelix Family protein
- Species: Oryza sativa subsp. japonica
- Source: Trihelix family gene from PlantTFDB
Protein Features:
Annotation Proteins:
- Refseq: XP_025880854.1 — sarcoplasmic reticulum histidine-rich calcium-binding protein
- TrEMBL: A0A0E0MVG5 — A0A0E0MVG5_ORYRU; Uncharacterized protein
- TrEMBL: Q94D75 — Q94D75_ORYSJ; Uncharacterized protein
- STRING: ORUFI01G14540.1 — (Oryza rufipogon)
Family Introduction:
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature:
- Systematic analysis of GT factor family of rice reveals a novel subfamily involved in stress responses. DOI: 10.1007/s00438-009-0507-x ; PMID: 20039179
Sequences:
CDS Sequence:
- >LOC_Os01g21590.1|Oryza_sativa_subsp._japonica|Trihelix|LOC_Os01g21590.1
ATGGGGCCGAGGGGGGTGGTGGGGTCGGCGGCAATGCTGGGGCTGGAGATGCACCTCGCCCACCCGCAGATGCACGCCGCCGCGTACCAGCAGCCGGACCCCCACGGCGGCGGCGGCGGCGGGTTCCAGCAGCAGGTGGCGGCGGTGAGGCAGCAGCAGCAGCAGTCGTACTCGCCCTACTCGGCGGGGGCGTCGTCGAGGGTGATCAAGGCGCCCGGCCATGACGATGGGATGGGCAACGGCGCCGGTAAGGGCGGCGTGGTGCAGCAGCAGCAGCAGCCCGGGTCGGTGGGGTGCCCGTGGACGCGGATGAAGTGGACGGACGGGATGGTGCGGCTGCTGATCAACGTCGTGTACAGCGTCGGGGACGACGGCGATGGCGTGGCGGCGGGCGGCGCCGCGGGTGGGAAGGCGTCCGCGGGGGCGGCGGGGCACGGGAAGGCCGGCGGGTCCGGGTCCCACGGCGCGCACGGGCAGGCGGCGGCGCAGCAGAAGAAGGGCAAGTGGAAGTCGGTGTCGCGGGCGATGATGGAGAGCGGCCACATGGTGTCGCCGCAGCAGTGCGAGGACAAGTTCAACGACCTCAACAAGCGGTACAAGCGCGTCGTCGACCTGCTCGGCCGCGGCAAGGCGTGCAAGGTCGTCGAGAACCACGCGCTGCTCGACGCCATGGACGAGCTCACCCACAAGGCCAAGGACGAGGCGCGCAAGCTGCTCAGCTCCAAGCACCTCTTCTTCCGCGAGATGTGCGCCTACCACAACTCTGGCGCGGCCGCCGCCGCCGCCGCGCACGGCCCGCACGGCGCCGGCGCCGCCGGCGTCGAGGCCACCGCCTGCTTCCACCACCCGCCGCCCGCGTCCATGGCCGCCGCCTCGTCCGCCGCGCGCCAGGCGGCGGCGGCGGCCCCTTCCCTTGGGATGAAGGACTCCTCCGCGGGCCCGGAGGACGACGAGGACGACAGCGAGGACGTCCCCAGCAGCAACGAGGTCGATGACGAGGACGATGACGACGACGACGACGACGACGAGGTGGGCCCAGGGATGAAGTCCCGCCGGATCTACGGCGGCCACCGCGTCCACCACCACCACCACCACCACAACGGCCACCACAAGCGCCGCCGTGGCGACGACGTGTCGTCGGCGGGCGCGGGGGACGACGACGACGAGGACGGCGTGAAGCGCGCGAGGGGGGCGGCCTCGGCCGCGGGGGGAGGCGACGACGAAGGCCCCTCCGCGGTGCAGCAGCTGCAGAGCGAGCTGGCGGCTGCGGTGGCCGGCGGCGGCGACCCGCAGCAGGTGCGGCAGTGGGTACGGCGGCGCACGGTGGAGGTGGAGGAGCAGCAGGTGGCGCACGAGGTGCGCGCGTACCACCTGGAGCGGCAGCGGCTCAAGTGGGAGCGGTTCCGCGCCAACAAGGAGCGCGACATGGAGCGCGCCCGGCTGCGCAACGACCGCCTCCGCATCGACGGCCGCCGCATGCTCCTCCTCCTCCGCCAGAAGGACCTCGACTTCGACATCGCCGAGGCAAACTCCTCCTCCGTCGACCACCTCACCTCGTCCGCCCCGCCGCCCCTCGCCGCGCTCCAGCAGCAGCAGCAGCCGCTCGGCTCCAGCCCCTCCACCGCCGGCGGCCACCCCAACTAA
Protein Sequence:
- >LOC_Os01g21590.1|Oryza_sativa_subsp._japonica|Trihelix|LOC_Os01g21590.1
MGPRGVVGSAAMLGLEMHLAHPQMHAAAYQQPDPHGGGGGGFQQQVAAVRQQQQQSYSPYSAGASSRVIKAPGHDDGMGNGAGKGGVVQQQQQPGSVGCPWTRMKWTDGMVRLLINVVYSVGDDGDGVAAGGAAGGKASAGAAGHGKAGGSGSHGAHGQAAAQQKKGKWKSVSRAMMESGHMVSPQQCEDKFNDLNKRYKRVVDLLGRGKACKVVENHALLDAMDELTHKAKDEARKLLSSKHLFFREMCAYHNSGAAAAAAAHGPHGAGAAGVEATACFHHPPPASMAAASSAARQAAAAAPSLGMKDSSAGPEDDEDDSEDVPSSNEVDDEDDDDDDDDDEVGPGMKSRRIYGGHRVHHHHHHHNGHHKRRRGDDVSSAGAGDDDDEDGVKRARGAASAAGGGDDEGPSAVQQLQSELAAAVAGGGDPQQVRQWVRRRTVEVEEQQVAHEVRAYHLERQRLKWERFRANKERDMERARLRNDRLRIDGRRMLLLLRQKDLDFDIAEANSSSVDHLTSSAPPPLAALQQQQQPLGSSPSTAGGHPN*