Information report for GSVIVT01008515001
Gene Details
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Functional Annotation
- Refseq: XP_002279798.1 — PREDICTED: uncharacterized protein LOC100268000 isoform X1
- Swissprot: Q84W56 — RNJ_ARATH; Ribonuclease J
- TrEMBL: F6GST5 — F6GST5_VITVI; Uncharacterized protein
- STRING: VIT_17s0000g01640.t01 — (Vitis vinifera)
- GO:0009658 — Biological Process — chloroplast organization
- GO:0009942 — Biological Process — longitudinal axis specification
- GO:0048193 — Biological Process — Golgi vesicle transport
- GO:0060918 — Biological Process — auxin transport
- GO:0005783 — Cellular Component — endoplasmic reticulum
- GO:0009507 — Cellular Component — chloroplast
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Fragaria vesca: mrna06360.1-v1.0-hybrid
- Gossypium arboreum: Cotton_A_16240_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A07G0459, Gh_D07G0523, Gh_A03G0459, Gh_D03G1080
- Manihot esculenta: Manes.14G052700.1.p, Manes.14G052700.2.p
- Populus trichocarpa: Potri.012G095800.1, Potri.015G093600.1
- Prunus mume: XP_008239449.1, XP_016651115.1
- Prunus persica: Prupe.5G152800.1.p, Prupe.5G152800.3.p
- Pyrus bretschneideri: Pbr036910.1
- Ricinus communis: 30147.m014528
- Ziziphus jujuba: XP_015881808.1
Sequences
CDS Sequence:
- >GSVIVT01008515001|Vitis_vinifera|Trihelix|GSVIVT01008515001
ATGGAAGCTCTGGCTCTGCCCAATCCCAGTGAACTCTCTCCTCATCTCCTAGGGTTTCTGGACCATCGTTTTGGAACCCTTGAAGACCTTCTCACCGCCCCTAATCTCGCCGTTGAACTCTCCAAAATCTGTTCCGATTTGGACGCCGATCTCTCAGCCTTTCACCGGAACCTCAAAACCCTCATTGCCTCATGGACTCGCCGCTCGATTGCGGCGAAAACCGCCGTTCTCAGGCTCAACTATCGGTTGCAGAACCTCGGAGTTTTGGCGTCCCAGAACGACGTCGTTTTGAGCCAGGACCTCCCGCGTCTCGCCCGTGAACTGCTGCGAGTCGAGGCTGTTCGTGGGTACGCGGAGACTGCTCTGAGGTTGGAGGCGCTGATTGGGGATCTCGAGGACGTGATTTTCACGGAAAATGTTGCGGGTACTGTGAAGCAGGAGAGAGTGATCGGAGCTGTGAAGATCGTCGCTGATATCGATTCGGTATTGGCAAATGTCGCTGAATTTCAACCTCGGTGGCGAAGGCTTCTGAATTCAGTGGATGATAGAGTGGAGAAAGCTTTGAGCATTCTCCGGACGAGAGTTGTTGCGAGTCATAGAACTCTTCTTTCTTCATTGGGATGGCCGCCGAAGCTTTCGGTTTCGAAAATCGAAAATGGAGGAGTCTCGGCGATTCCGAATCCTCTGATGCTGATGAGAGGAGAGAAAAGGGAGAGTTATTCTCAGAGCTTTGTGGCTCTCTGTGCTTTGCAGCATGTGAGGGAAAAACGACGTCATAGTGATGATCTGGGGTTCAAAGCAAAGCTTTGGGCCATTGATGAACTGGTATCTCCTATTGCATCCAGAATTGAGTACCATTTCTCGAAGTGGGTTGATCAACCCGAGTTTATTTTCGCTCTTGTGCGTAAGATTACAAGCGATTTCGCTGTGGGTGTGGAAGAAGTCTTGCAGCCTCTGATTGATGAGGCTAGATTGGTGGGTTGTAGTGCCAAAGAAGCTTGGGTGTCCGCAATGGTGCAAATGCTTTCTGGGTTTTTGGGACACAGAGTATTCTCTGTTCTTGCTCAGAGGTACAAGGAGAAAGAGAAGAAATTGGAGGTTGGGTCTTCTTGGCTTCATTTGATTGACCTGATCGTTGCTTTCAATAAACAAATGCAATCACTTGTAAATTCAGAAAGTTATCTTCTAGCATCTGAGCTTGATAGAGCTTGGTTAGTTGAAAGCAAGAAGGGAGTTGATGTTCTTACTAACAAAGAAACCGAGCGATTTCTTTTGTCTACTAGGGAAGACCATAGGGCTCCGGTAATTGCAGAATCCGCTCTTAAAATGGCCTGGGAAATGATTGATCGAGGCCAAACCCTACCTGCCATTTTACCACGAATCCAGTTTATCAGGTCCACTGCAGCCAGATTTTTGTGGTACTTTCTCAATGTACTGCTGTTGAGATGGAAGGGAACAGACTTATCTCCTGAGAATCCTGATGATGAGACACTAATGAGAGCCTGTGGATTGATCAATGCTGCAGGATATTGTGAGTTTAAACTGCAGCAATGGAGCGATGATGTGAACTTTTTGGAGATGAAAATGGCTGAGACAGAATCAAAGAACCCTGTTAAAGACAACACTAATGATCATAGTTGCTTCTTTGATGAAGAAATCAAGAGCTTGGATGAGCTCGAGACTAATTGGCTTATGGAGATAGTTGCTAATCTTCTTCGCCAGTTTGAGTTGCTTTCCTGGGAATACATGGAAAACCTGAAACATTTTGACCAAGAGCAAAACCGTTTTTGTCCAACTACAACTTCAGCAGCCATGGATTTGGCTATATCCCATGATCTTATCGAGGCATTGGATGCTTTGAGGAGTCAGCTTCTTGTTATAGAGAGGAGTCTCAATCCAAGAGACTTCTTGGATCTATGGAGGAGTGTTGCAGAGGGGCTCGACCATTTTATCTTTAGCAGTATCTTTGGAATTGATATTGGATTCTCCGAAGAAGGTGTTAATCAGATTGGAGCTGATATGAGGGCATTGTTCTCTGTTTTTCAGCCGTTTTGTGCCCGGCCTGAAGCATTTTTCCCTTGTATTAGAGATTCTCTTAGGCTACTAGAGATGGATAAGGGAGAGGTGAAGTATTTGCAGGCAGTTTTGTCCAGTGATGAAAATAGAATAAAATGCTTGAGATCTTGTGGAATTTCACACGTATCTTTTGGTCAAGGCTTTGTTTCTTCCCTTGAAACCTCTCTCCATACGGGAACTTCTAGGGTTTTTTTTTTTTTTCATACGCTTTCTTGCAGACCAAACAAAATTGTTGCAGAATACATGGCTGCTTTTAGTGCACTTTCTAGCTGTCCGTACACTCTCCCTTACCGGCCAAAACCTAGCAACCGTTCCATTTTGTGCCGTATGGGCTCTGCTCCCACTTCTGTAGGTACAAGTGTATCTAAAGTACCTCGCAAGAGATCACGAAGAATGGAAGGGGTTAAAAAAAGCATGGAAGACTCTGTTCAGCGCAAAATGGAGCAGTTCTATGAAGGGTCCGAAGGCCCACCACTCCGTGTTCTTCCAATAGGTGGTCTGGGTGAAATTGGGATGAATTGCATGCTTGTTGGGAATTATGATCGATATATTTTGATTGATGCTGGTGTCATGTTTCCGGACTATGATGAGCTTGGTGTTCAGAAAATTATACCTGATACCACATTCATCAAGAAATGGAGCCACAAAATTGAAGCAGTGGTCATAACACATGGTCATGAAGATCACATTGGTGCGTTGCCTTGGGTTATCCCAGCTTTGGATTCCCATACGCCAATATTTGCATCATCTTTCACAATGGAGCTTATTAAAAAGCGTTTGAAGGAGTTTGGAATCTTTGTTCCATCTAGGCTTAAGGTGTTTAGAACAAGGAAGAAATTCATTGCTGGTCCATTTGAAATAGAGCCTATCAGGGTCACCCACTCTATTCCTGATTGTTGTGGATTGGTTATACGCTGTGCTGATGGTACAATTCTTCATACTGGGGACTGGAAGATTGATGAGTCCCCCTTAGATGGGAAAGTTTTTGATCGTGAAGCTCTAGAGGAACTCTCAAAAGAGGGAGTAACTTTGATGATGAGTGACTCAACCAATGTACTCTCCCCTGGAAGGACAATTAGTGAGAGTGTTGTAGCAGATGCACTATTGAGACATATTTCATCTGCTAAAGGAAGGGTTATAACTACTCAGTTTGCATCAAATATACATCGCCTTGGAAGTGTGAAAGCTGCAGCTGATTTAACAGGCAGAAAGTTGGTGTTTGTTGGTATGTCCTTGAGGACATATCTGGATGCAGCATGGAAGGATGGGAAGGCACCAATTGATCCATCGACATTGGTGAAAGTGGAAGATATTGATGCCTATGCTCCAAAGGATTTGCTTATTGTCACAACTGGCTCTCAAGCAGAACCACGTGCTGCTCTGAATCTTGCATCATATGGAAGTAGCCATTCCCTCAAATTGAGCAAGGAAGATATAATTTTATATTCAGCCAAGGTAATCCCGGGTAATGAAACTCGTGTAATGAAGATGCTAAACCGCGTATCAGAGATTGGATCAACTATCATAATGGGTAAGAATGAGGGGCTGCACACTTCTGGTCATGGATATCGTGGAGAATTGGAGGAAGTACTCAAGATTGTGAAGCCACAACACTTCTTACCCATTCATGGAGAACTCTTGTTCCTGAAAGAGCATGAATTGCTTGGAAAATCAACTGGCATTCGTCACACTACAGTTATAAAGAATGGGGAGATGCTTGGAGTTTCACACTTGAGGAACAGAAGAGTTCTGTCTAATGGTTTTATTTCCCTTGGGAAGGAGAATTTGCAGTTGATGTATAATGATGGGGATAAAGCATTTGGTACGTCAACTGAACTTTGCATTGATGAGAGACTAAGAATTGCATCAGATGGTATTATCGTAATCAGCATGGAAATATTACGCCCTCAAGTTGTAGATGGTGTAACTGAAAAAAGCTTAAAAGGGAAAATAAGAATCACCACACGATGCTTATGGCTTGACAAAGGGAAACTTCTAGATGCACTCCACAAAGCTGCCCATGCCGCACTTTCTAGCTGCCCAGTGAATTGTCCTTTAGCTCACATGGAAAGGACTGTGTCTGAGGTGTTGAGGAAGATGGTAAGGAAGTATAGCAGTAAGAGGCCTGAAGTTATTGCAATTGCTATTGAAAACCCATCAGCGGTTCTTGCTGGCGAGCTCAATGCAAGACTATCTGGAAAGTCGCATGTTGGTTTTGGCGCATCAGCACTAAGAGAAGTTGTTGATGAATATCCTAAAAAGAGACGGATGAACAGGATGCAAGAGGAGGCAGGTGGCCATATACAGGTAGAGAACACTTCACAACAAGATTTAAAAGGTGATGATGGTGTTGAAGTCCAACGATTACTATCTGAGGAAGAAACGAATTCTTCAAGTTCCAATAGTGCAGAAATATTTTCTCCTGATTCTGGGGACACTGAAGATTTCTGGAAATCATTCATTGACTCATCATCACCTGTTGACCAATTAATGGAAGACAAAATCAGTTTTGTTCCACAAGGCTATCCAATGGAGCTCAAGAAAGATTCTGAAATCAGAGAAGTTGACTCTTCTGAAGTGCCAAAATCTCAACCGAAGTCTCCCAAGCCCATGAAACGAAACAAATGGAAACCTGAAGAGGTTAAGAAACTTATTAGCATGCGTGGGGAATTGCATAGCAAATTCCAAGTTGTGAAAAGGCGAATGGCTCTCTGGGAAGAGATAGCTACAAACCTGTTGGCTGATGGAATCGATCGAACTCCAGGGCAGTGTAAATCCTTATGGACATCTCTGGTTCAGAAATATCAGGAAATCAAGGGTGATAAGAAAAGCAGGAAAAGTTGGCCACACTTTGAGGACATGAATGAAATTTTATCTGATTTAGAGCCAATGGCACCAAAATGA
Protein Sequence:
- >GSVIVT01008515001|Vitis_vinifera|Trihelix|GSVIVT01008515001
MEALALPNPSELSPHLLGFLDHRFGTLEDLLTAPNLAVELSKICSDLDADLSAFHRNLKTLIASWTRRSIAAKTAVLRLNYRLQNLGVLASQNDVVLSQDLPRLARELLRVEAVRGYAETALRLEALIGDLEDVIFTENVAGTVKQERVIGAVKIVADIDSVLANVAEFQPRWRRLLNSVDDRVEKALSILRTRVVASHRTLLSSLGWPPKLSVSKIENGGVSAIPNPLMLMRGEKRESYSQSFVALCALQHVREKRRHSDDLGFKAKLWAIDELVSPIASRIEYHFSKWVDQPEFIFALVRKITSDFAVGVEEVLQPLIDEARLVGCSAKEAWVSAMVQMLSGFLGHRVFSVLAQRYKEKEKKLEVGSSWLHLIDLIVAFNKQMQSLVNSESYLLASELDRAWLVESKKGVDVLTNKETERFLLSTREDHRAPVIAESALKMAWEMIDRGQTLPAILPRIQFIRSTAARFLWYFLNVLLLRWKGTDLSPENPDDETLMRACGLINAAGYCEFKLQQWSDDVNFLEMKMAETESKNPVKDNTNDHSCFFDEEIKSLDELETNWLMEIVANLLRQFELLSWEYMENLKHFDQEQNRFCPTTTSAAMDLAISHDLIEALDALRSQLLVIERSLNPRDFLDLWRSVAEGLDHFIFSSIFGIDIGFSEEGVNQIGADMRALFSVFQPFCARPEAFFPCIRDSLRLLEMDKGEVKYLQAVLSSDENRIKCLRSCGISHVSFGQGFVSSLETSLHTGTSRVFFFFHTLSCRPNKIVAEYMAAFSALSSCPYTLPYRPKPSNRSILCRMGSAPTSVGTSVSKVPRKRSRRMEGVKKSMEDSVQRKMEQFYEGSEGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDYDELGVQKIIPDTTFIKKWSHKIEAVVITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIKKRLKEFGIFVPSRLKVFRTRKKFIAGPFEIEPIRVTHSIPDCCGLVIRCADGTILHTGDWKIDESPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRHISSAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSLKLSKEDIILYSAKVIPGNETRVMKMLNRVSEIGSTIIMGKNEGLHTSGHGYRGELEEVLKIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTTVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLMYNDGDKAFGTSTELCIDERLRIASDGIIVISMEILRPQVVDGVTEKSLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLAHMERTVSEVLRKMVRKYSSKRPEVIAIAIENPSAVLAGELNARLSGKSHVGFGASALREVVDEYPKKRRMNRMQEEAGGHIQVENTSQQDLKGDDGVEVQRLLSEEETNSSSSNSAEIFSPDSGDTEDFWKSFIDSSSPVDQLMEDKISFVPQGYPMELKKDSEIREVDSSEVPKSQPKSPKPMKRNKWKPEEVKKLISMRGELHSKFQVVKRRMALWEEIATNLLADGIDRTPGQCKSLWTSLVQKYQEIKGDKKSRKSWPHFEDMNEILSDLEPMAPK*