Gene Details:
- Gene ID: GSBRNA2T00110892001
- Gene Name: GSBRNA2T00110892001
- Gene Family: Trihelix Family
- Description: Trihelix Family protein
- Species: Brassica napus
- Source: Trihelix family gene from PlantTFDB
Protein Features:
Annotation Proteins:
- Refseq: XP_013583546.1 — PREDICTED: uncharacterized protein LOC106292491
- TrEMBL: A0A0D3CLJ4 — A0A0D3CLJ4_BRAOL; Uncharacterized protein
- TrEMBL: A0A3P6FGQ4 — A0A3P6FGQ4_BRAOL; Uncharacterized protein
- STRING: Bo5g137800.1 — (Brassica oleracea)
Gene Ontology:
- GO:0005737 — Cellular Component — cytoplasm
- GO:0016740 — Molecular Function — transferase activity
Family Introduction:
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature:
- Systematic analysis of GT factor family of rice reveals a novel subfamily involved in stress responses. DOI: 10.1007/s00438-009-0507-x ; PMID: 20039179
Sequences:
CDS Sequence:
- >GSBRNA2T00110892001|Brassica_napus|Trihelix|GSBRNA2T00110892001
ATGGCTTCCTGTGACGACGACTTCTCTCTTCTAGGAGAGGATCAATCAAACCCCAACCAACATCACCACCACCACCACAACCAGGTTCTCCACCACGCGCCGTACGCTCCCAGACGATTCGCCCCGAAGCTCTCGAACCAGCAGATCCACGTCCCTCATCACCAGAGCAACGGCGACGAGGACGACGAGCACCACGACGTCGTCGCTTCTTCCGCTTTTCACGGCGTGAATCCCTTCTCGGCCGACGAGAACTCGAATCCCTATGATAACAACAGCAACGCGGCTGTGGAAGGAGGAGACGAGGATCTGGACGCGAACAGATCCAGGATCGGGGGAGGAGTTCGTCTGGAGAAGAGGCAGAGTCAGGAGGAGCTCAGCGACGGAGGAACGACGAACGGCGGCGGTAGCTTCAAACGGCCGAGGACGTCGTCTTCCTCCGCCGGCGAGTACAGGAAGGATAGAGAGGAGTGGAGCGACGCGGCGATCACGTGTCTGTTGGATGCGTACTCTGACAAGTTCACGCAGCTCAACAGAGGGAATCTCCGGGGGAGGGATTGGGAAGACGTTGCTGCGACGGTGAGCGAGAGGTGTGAGAAGCTGATCAAGAGTGTGGAGCAGTGTAAGAACAAGATTGATAATCTCAAGAAGAGGTATAAGCTAGAGAGGCATAGGATTAGTAGCGGCGGAACGTCGGCTAGCCATTGGCCTTGGTTCAAGAAGATGGAAGAGATTGTTGGCAACTCCATGACCACAAAAGGTGCGTCTGATGAAGATAGAAGCGGCAGCTCGCTGGGGAATGCTGCCAAGCCAGCGAGGAGGTATCCCTTGGTGACGTATAACCCTGGGGTTCAGATTAATAACGTCAAGTCCAAGGCTACATCAAACCCTAGATGGCGAAGAGTGGTTTTGAAAATCAGTGGTGCAGCTCTTGCCTGCACGGGTCCTAATAACATTGATCCGAAGATCGTTGGTCTGATTGCTAGAGAAGTTGCGATGGCTTGTCGTCTTGGTGTAGAGGTAGCAATAGTTGTTGGGAGTCGGAACTTATTTTGCGGTGGTACATGGATTACTGCTACTGGTTTGGATAGAACCACTGCATATCATATCAGTATGATGGCGTCTGTGATGAATTCTGTTTTGCTTCAGTCATCTCTGGAGAAAATGGGAGTTCAGGCACGGTTACAAACTGGAATTGCGGTTCAGGGGGTCGGGGAGCCGTACAATCGTCAACGAGCCACTCGACATCTTGATAAAGGCAGAGTGGTAATATTTGGTGGCATTGGTGCAACGCTTGGCAATCCACTTTTATCATCCGATGCAGCTGCAGCTCTTCGAGCTATAGATATTAATGCAGAGGCAATGGTGAAAGGAACAAACGTGGAAGGTGTTTATGACTGCCATTCACAAGATAGTAACGCCACATTCGAGCATATAACATTTCACGATTTGGCTTCTAGAGGTCTTACAACAATGGACACAATGGCCCTTAACTTCTGTGAAGAGAATAGCATTCCAGTTGTGGTGTTTAACTTTCTGGAAGCTGGGAACATCACAAAGGCATTGTGCGGAGAACAAGTGGGCACTTTAATCGACAGGACCGGGAGGGGTGTGAGTTAG
Protein Sequence:
- >GSBRNA2T00110892001|Brassica_napus|Trihelix|GSBRNA2T00110892001
MASCDDDFSLLGEDQSNPNQHHHHHHNQVLHHAPYAPRRFAPKLSNQQIHVPHHQSNGDEDDEHHDVVASSAFHGVNPFSADENSNPYDNNSNAAVEGGDEDLDANRSRIGGGVRLEKRQSQEELSDGGTTNGGGSFKRPRTSSSSAGEYRKDREEWSDAAITCLLDAYSDKFTQLNRGNLRGRDWEDVAATVSERCEKLIKSVEQCKNKIDNLKKRYKLERHRISSGGTSASHWPWFKKMEEIVGNSMTTKGASDEDRSGSSLGNAAKPARRYPLVTYNPGVQINNVKSKATSNPRWRRVVLKISGAALACTGPNNIDPKIVGLIAREVAMACRLGVEVAIVVGSRNLFCGGTWITATGLDRTTAYHISMMASVMNSVLLQSSLEKMGVQARLQTGIAVQGVGEPYNRQRATRHLDKGRVVIFGGIGATLGNPLLSSDAAAALRAIDINAEAMVKGTNVEGVYDCHSQDSNATFEHITFHDLASRGLTTMDTMALNFCEENSIPVVVFNFLEAGNITKALCGEQVGTLIDRTGRGVS*