Information report for GSBRNA2T00036930001
Gene Details
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Functional Annotation
- Refseq: XP_013709922.1 — uncharacterized protein LOC106413724
- TrEMBL: A0A078GPI4 — A0A078GPI4_BRANA; BnaA02g11220D protein
- STRING: Bra022563.1-P — (Brassica rapa)
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Actinidia chinensis: Achn354421
- Brassica oleracea: XP_013619892.1, XP_013610231.1
- Brassica rapa: XP_009127273.1, XP_009107174.1
- Capsicum annuum: CA03g16650
- Fragaria vesca: mrna13363.1-v1.0-hybrid
- Malus domestica: MDP0000129923
- Petunia inflata: Peinf101Scf01452g04008.1
- Populus trichocarpa: Potri.012G132300.1
- Prunus persica: Prupe.2G286400.1.p
- Ricinus communis: 30147.m014143
- Solanum lycopersicum: Solyc03g006900.1.1
- Vitis vinifera: GSVIVT01018456001
- Ziziphus jujuba: XP_015877983.1
Sequences
CDS Sequence:
- >GSBRNA2T00036930001|Brassica_napus|Trihelix|GSBRNA2T00036930001
ATGGGTGAGACAACAAAAGGAGATGCTACAAAACCATCACCGAATCAAATCTCCCCACCTAAAGATTCTTCACTTGATCACCAAACACCAAACCCATCAGTCCTCCACCACCAACACCAATCTTTCCTGTCTTCTCCCATCTTCATCCCAACCGTCTCTTCTCCAGGAGCTCCTGTCATCCCCAAACGACCACGTTTCAGCTCTTCCGGCGGTCTCTCCCCACCTCAATGGAGAGCCTTGCCGTCACCTTCCACCGTACCAACCGCCTCCACAATCTCTTCATTACCGTTCCCTTCCACCGCCGTCATAGCAGCCTCTTCTACCGAAACCGCCGGATCTTCACCGCTGGTTCAAGAAGCTACCAACACCGAGAAACAACAACCCGAAACGGAGTCCTTTCAACATAAATTTAGAAAAGGGAAATACGTGAGCCCTGTGTGGAAACCAAACGAGATGCTATGTCTAGCAAGAGCATGGAGAGTCCAGTACCAAAACCAGAGAACCGGGTCTGGATCCGGATCCGGGTCGGGCGAGGGAAGAGGGAAAACAAGGGCTGAGAAAGACAGGGAAGTAGCCGAGTACCTAAACCGGAAAGGTGTAAACCGGGATTCAAAAGTCGCTGGCACAAAATGGGACAACATGCTTGGTGAGTTCAGGAAAGTGAACGAGTGGGAGAAAGGAGCAGATAGAGAGAGGTTCGGTAAGAGTTACTTCAGGCTCTCTCCTTACGAGAGGAAACAACATCAACTTCCCGCGTCTTTCGACGAAGAAGTGTACAATGAATTGGCTCTTTTCATTGGTCCACGTGTCAGAGCTCCGACTATTAGCCGCAGTGTTAGTGGCGGAGCTACGGCGGATGTTACCTTAACGCCTCCGTCTGCTGAGACGCTTCCTCCTCCTCTTCATCCACCGGTTATGACTTCAAGAGATGATATTAATAACAACCCTATCACTTCCATCGGAAGAGGGAAGAGATTAGCATTATCAATAGTTGGAGATGATCATCCTCAGTATCCGTATTCAAGCAACATTGCTAGAGGGTCAGGTTTATTCTCTAATAGATCATTGTACTATAATCCTTCTTGTGAGAGGATTCCTTCTTCTTCTTCTTCATCTTCCTCTCTAAAAGATCTTCGCCGTGTTGGGAAAATACGGCTAACTTGGGAGGAATCGGTTAACTTGTGGGCTGAAGAAGGAGAGGTTGATTATGGGAGAATTAGGGTTTGTGGGTCGAGTTTCTTGAATGCAGATGAGCTCACCTACTTGGATGATTCCATGGTGGCTTCTACAATGGAATCTTTCGAAGATGGACCTCTCAAAGGATTTTCTTTGGATAAATTCATTTCTGGTCAACATCTTAAAGTCTTTGGAAGACAAAAGTCAACTTCATCATCTGCTCCTCCACTTTCAGTTAATATGGCATTTGATAGGGCTCAGCTTCCACTCTCCGAACACATTCACAAATCAATATCAACATTGGAGTTCCAAGACCCATCAGAGCACTGCTTGAGTAAATTGCGGGTGCCGGCGGGGAATCTTCCGAGCATAACTGAGCTCGCACGGTATCTTCAAGAACCACCGCCGGAAAATCTCCGGTTTCCTCTCCGACTAGACGTTTACAATGACTTGCCACTGGGAAAAGAGCTCTTCTTCTCCACCTCCTCCACGGAGCTACTTGATTGTAGAGCAATCACATATGATATCCTCGGTCCCATAATGTCCCCCTTAAATAAGGGTTTCGTCATCTTTAGCAAAGACTCGCTGATACCGCTTTGGGATGACTGCGTTAACCGAATGGTTTCAAAGTTTTGTGAAATGGTGGTTTTGCGTAAACCGGATTCGTCTTCTTGTGTTGAAAACGTCCAAGATCAGTGGCCTAACGTGATGGGATTTGTAAAAGGGTTTGGTTTATGGAGGGGAGAAGAGGTTGATAAGGTACGAGAAGGTGCACCTGATCCTTCTTCTCTATTGGTCGAAAAGATTCTTTGGTCGTACAACGATCTTCCATACATTCTTGGTTATTACGCAATAGGGCTCACCGTAACGTTCTGCTCTTTGAGCCGCTCTTCGTATGATCGAGTGACCTGCACTGATCTTTATTCATTTGATGTCTCGTCACCATCGGACCGAATCAAGGCATTGGTTCCTTGTTACCGTCTCGCTTCTCTTTTACCTCTGCTTGCAGATCAGTGCACTGCGGGTCGTTTATGTTACAACGACTTCGAGAGAATCATTCATGGAGACTTTTTGACCGAGATGACCCCTCACACGGTGACTAAGTATTACTCAAGCAAGACAAAATGGAACGTAGCGAAAGGAATCTACGACTTTCTCGACCAACGAGTTCCACACGCGGAGTATTTGGACAAGGCAAGCGAGAAGGATCTCTCGTTGAGCTTTAAGCCACGTGGAATCAGAGTCAAACCTCTAAATGTTGACCAGCTCATCGAATCTCTGATGTGTGTGACGAGAGCGCTTGTTGCGCTTCACGACATTTCGTTCATGCATCGTAACATAGGATGGGAAAATGTAATGAAAAGCGAGACGACGTCAACATCGAACGCCGAATGGTTTGTTTGCGGGTTCGAAGAAGCGGCTGAGTCCCCACAGCTCAATCCGCACCGCCCTGCGGCCCAGGAAGAGGAGGAGGAGCGTGGGAGACACGCGCCGGAGATGGAGAGAGGATTGCATGCGGTGAAAGTGGATGTGTGGGGAGTAGGTTATATGATAAAGACTTGTGGAGTGAGTAATGTTCCAAAGATGTTAAGAGAACTTCAAGGTAAGTGTTTGGAACCGAACCAAGAGAACCGACCGACCGCAGCCGATTGCTTCCACCACCTCCTCCAGGTTCAGCCTGCCGTTCCATCGTCGTATTAG
Protein Sequence:
- >GSBRNA2T00036930001|Brassica_napus|Trihelix|GSBRNA2T00036930001
MGETTKGDATKPSPNQISPPKDSSLDHQTPNPSVLHHQHQSFLSSPIFIPTVSSPGAPVIPKRPRFSSSGGLSPPQWRALPSPSTVPTASTISSLPFPSTAVIAASSTETAGSSPLVQEATNTEKQQPETESFQHKFRKGKYVSPVWKPNEMLCLARAWRVQYQNQRTGSGSGSGSGEGRGKTRAEKDREVAEYLNRKGVNRDSKVAGTKWDNMLGEFRKVNEWEKGADRERFGKSYFRLSPYERKQHQLPASFDEEVYNELALFIGPRVRAPTISRSVSGGATADVTLTPPSAETLPPPLHPPVMTSRDDINNNPITSIGRGKRLALSIVGDDHPQYPYSSNIARGSGLFSNRSLYYNPSCERIPSSSSSSSSLKDLRRVGKIRLTWEESVNLWAEEGEVDYGRIRVCGSSFLNADELTYLDDSMVASTMESFEDGPLKGFSLDKFISGQHLKVFGRQKSTSSSAPPLSVNMAFDRAQLPLSEHIHKSISTLEFQDPSEHCLSKLRVPAGNLPSITELARYLQEPPPENLRFPLRLDVYNDLPLGKELFFSTSSTELLDCRAITYDILGPIMSPLNKGFVIFSKDSLIPLWDDCVNRMVSKFCEMVVLRKPDSSSCVENVQDQWPNVMGFVKGFGLWRGEEVDKVREGAPDPSSLLVEKILWSYNDLPYILGYYAIGLTVTFCSLSRSSYDRVTCTDLYSFDVSSPSDRIKALVPCYRLASLLPLLADQCTAGRLCYNDFERIIHGDFLTEMTPHTVTKYYSSKTKWNVAKGIYDFLDQRVPHAEYLDKASEKDLSLSFKPRGIRVKPLNVDQLIESLMCVTRALVALHDISFMHRNIGWENVMKSETTSTSNAEWFVCGFEEAAESPQLNPHRPAAQEEEEERGRHAPEMERGLHAVKVDVWGVGYMIKTCGVSNVPKMLRELQGKCLEPNQENRPTAADCFHHLLQVQPAVPSSY*