Information report for DCAR_030968
Gene Details
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Functional Annotation
- TrEMBL: A0A175YIN8 — A0A175YIN8_DAUCS; Uncharacterized protein
- GO:0003677 — Molecular Function — DNA binding
- GO:0005515 — Molecular Function — protein binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Citrullus lanatus: Cla007790
- Cucumis melo: MELO3C023266P1
- Cucumis sativus: Cucsa.250070.1
- Gossypium arboreum: Cotton_A_39997_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D12G0882, Gh_A12G2549
- Nicotiana benthamiana: Niben101Scf06087g06001.1, Niben101Scf04731g03002.1
- Nicotiana tabacum: XP_016457979.1
- Sesamum indicum: XP_011099803.1
- Solanum lycopersicum: Solyc11g005380.1.1
- Solanum melongena: Sme2.5_06171.1_g00008.1
- Solanum tuberosum: PGSC0003DMP400007053
Sequences
CDS Sequence:
- >DCAR_030968|Daucus_carota|Trihelix|DCAR_030968
ATGTTGGTGGTCAATTCCGGTGGCGCCGCCGCCGGAAATGAGAGTTTTGCTGGCTCAGATTCAGCTGGTGGCGATGAGGGTGACCGGAACTCAGCCGGTAACCGGTGGCCTCGTGAGGAGACTCTTGTGTTGTTGCAAGTCAGACAGAGTATGGATGAAGCTTTTAGAGACTCTAATCTTAAAGCTCCTCTTTGGGATGAAGTTTCTAGAAAATTAGGCGAGTATGGGTACACTAGGAGCTCAAAGAAGTGCAAAGAGAAGTTTGAGAACATTTATAAATATCACAGGAGAACGAAAGTGGGTAAATCTGGTAGACAGGATGGTAAAAATTACCGATATTATGAGCAGCTTGAGATATTCGACAATCAATCCTCGTATCCAATAAACCAAGACAAACAAACATATTCAATGGATGGAACAACGTCTATGCCTAAACCCACAAGTAGTTCTGTTATGATGGCAAAACCTGTAAATCAGGTACCTCATGGTGATACCCACATTCCAAGTTTTGAGCTCATGGACACATCCACGTCTACCTCTTCATCTTCTGGGGGAGGGCATCCGAAGAAAAAGAGAAAATTAATGGAATATTTCAATGGATTGATGAAGCAAGTTTTGGAGAGGCAAGAGAACTTACAGAAGAAGTTCATAGAAGCAATTGAAAAGCTTGAGAAAGATCGTATCAGTAGAGAAGAAGAGTGGAGGGCACAACAATTAGCTACAAAGAAAAGAGAACAAGGACTTCTTGCCCATGAACGCTCCTCTTCTGCAGCAAAAGATGCTGCTATTCTTTCTTTCTTGCAAAAGATTTCAGAGCAATCACCTCCTTTGCAGTTACCCATAAATTCAGCTCCATTGGAAAAAATTCTAAGTATGCCGCAACCACAATACAGTACTCGTGAGAGTTCACCAGTCACAAAGAGTATCGTCCATTATTCTCCTGGTTTTCCTTCTTCCCGGTGGCCAAAAGCTGAAGTGGAAGCTTTAATTACAGTAAGGGAAAATTTGGATATGCAATATCATGATAGTGGATCAAAGGGATCGGTGTGGGAGGAGGTTTCGTCTGCCATGACGAGGCTTGGTTATGATAGAAGCTCCAAGAGATGCAAGGAAAAATGGGAGAACATTAATAAGTATTACAGGAGAGTGAAAGAAAGTAATAAGAAACGCCGTCAAGATTCAAAAACATGCCCTTACTTTGAGATGCTGGAGTCGCTATACGAAAAGAGGTCAAAAAGGCAGGTTCAAAGTTGCCAGTGTAATGAACTTGCGAGTTGTGGCACACTGTGGAAGCTGGTGAACCAGCCAACCAGTATGGAAAGACTTTATGATCTTAAGCACAATACTTCAAAGTTTCACGCGGCTTCAGGGTTTTCTCTGTTTCTCTGCCATGAATTTGAATCAGAAGACACCGGAAAGATTAGTGACGCTGTTCGGAACTGCGTGAGCGACCTCAAAGAGTTCAGCAAAGTTGTAAAGCTCGTGGCTTTCGAACCTTTTCAATCGCCCCTCCACGCCCTAAATCAAATCACTGCTTTCTCTTCAGGTCAAATGACTGACGAGTTACACAAATTTTTGGTACTTGGGCTCCCCAAACCGGAGGAGGGAAACGATTCCGAATTGAGTGTAGGATTAGCAGAGCCGAAACTTGGTTCTCGTATCTTTCAAGTAACAAAGATTCCCTGCCAAACCGATGAGTTTATTTTAGAAGTCTTTCGTGATTGGTCCAATCTTCATACTGATATTTTGGAGTCTGTTATAAAGAGGATGACTTGTTTTGACATTATTCGCTTCAAACACGTATGTCGTTCATGGAAAATAGCTGTTTTGAATTTCTGGCATATCTCTAATCCTTCTTCACAGCCTCCATATATGATCTGGTCAACAACAGACAACAGGGGATGTTGTTTTCTCAACCTTGCTCGTCAGAAACTATACCACGAGTTCAACAACTTGTGGGGGGATTTAAATATTTATTGTATTGGATGTTCAAAAGGCTGGTTGATATTACATGTTGTGGATGAAGAATACCGATCTTCTGTATTTATCTTCAACCCCTTTTGTTTTGTAGCGAGGAAGATTGTTATTCCTACCGATACTCTTCCAGATTATAGGATTATCAGAAAAAATTATCGAACTCTTCTCACATCAGATCCCATTCATTCCGGAGGCAAATTTGGAGTCATTTTCCTAATGTATAATAAAGTCAGATTGTTAATGCAGGATAGTTATCATCCCGAAAACAACAAGTGGATCGAGGACCCGTCGATGTCTTGGTCGTTCTCTTCCCTTGAAGAATCATGTATCAGAAAATATGGATATATTCAATCGACGTCCAAGTTCAATTCGACAACCAATTGTTCACCTTGTTTTAGCAAGATGACTCGTAGCATTCCTCCAAGAAAAATTTTCTGGCGTCCTTGGGCCATTAATAATATTATACTTTATTTGGTAGAATCGGGGGTTGATATTCTTCTTGTTACAAGGATTACAGGTACTCTTCATGAAAATGGTCAGCAGGTTCATGCAACTAGGTACTTTGATGTTTTTACGTATAATTTTGATGACAAACGATGGGTGAAAGTGGATTCTCTGGGAGATCGTAGTTTGTTTCTTGGTGGTGATCATTCTCTGTCTCTTTCGGTTTTGGATATTCAAGGTTGTCAAGGGAATTCTATTTATTTCACGGATCATATTTCTTCAATTAGCAACGAGACTGGAGTTGATACGGGTGTATTTAGCTTGGAGGATGGAAGTATCAAGAAGCTCACATGGAGGAGGCAAAGAGAATCAAACAAAGAACAATTTCAGTTTAGCTAG
Protein Sequence:
- >DCAR_030968|Daucus_carota|Trihelix|DCAR_030968
MLVVNSGGAAAGNESFAGSDSAGGDEGDRNSAGNRWPREETLVLLQVRQSMDEAFRDSNLKAPLWDEVSRKLGEYGYTRSSKKCKEKFENIYKYHRRTKVGKSGRQDGKNYRYYEQLEIFDNQSSYPINQDKQTYSMDGTTSMPKPTSSSVMMAKPVNQVPHGDTHIPSFELMDTSTSTSSSSGGGHPKKKRKLMEYFNGLMKQVLERQENLQKKFIEAIEKLEKDRISREEEWRAQQLATKKREQGLLAHERSSSAAKDAAILSFLQKISEQSPPLQLPINSAPLEKILSMPQPQYSTRESSPVTKSIVHYSPGFPSSRWPKAEVEALITVRENLDMQYHDSGSKGSVWEEVSSAMTRLGYDRSSKRCKEKWENINKYYRRVKESNKKRRQDSKTCPYFEMLESLYEKRSKRQVQSCQCNELASCGTLWKLVNQPTSMERLYDLKHNTSKFHAASGFSLFLCHEFESEDTGKISDAVRNCVSDLKEFSKVVKLVAFEPFQSPLHALNQITAFSSGQMTDELHKFLVLGLPKPEEGNDSELSVGLAEPKLGSRIFQVTKIPCQTDEFILEVFRDWSNLHTDILESVIKRMTCFDIIRFKHVCRSWKIAVLNFWHISNPSSQPPYMIWSTTDNRGCCFLNLARQKLYHEFNNLWGDLNIYCIGCSKGWLILHVVDEEYRSSVFIFNPFCFVARKIVIPTDTLPDYRIIRKNYRTLLTSDPIHSGGKFGVIFLMYNKVRLLMQDSYHPENNKWIEDPSMSWSFSSLEESCIRKYGYIQSTSKFNSTTNCSPCFSKMTRSIPPRKIFWRPWAINNIILYLVESGVDILLVTRITGTLHENGQQVHATRYFDVFTYNFDDKRWVKVDSLGDRSLFLGGDHSLSLSVLDIQGCQGNSIYFTDHISSISNETGVDTGVFSLEDGSIKKLTWRRQRESNKEQFQFS*