Information report for DCAR_026220
Gene Details
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Functional Annotation
- Refseq: XP_017219494.1 — PREDICTED: ribonuclease J isoform X1
- Swissprot: Q84W56 — RNJ_ARATH; Ribonuclease J
- TrEMBL: A0A164UNR9 — A0A164UNR9_DAUCS; Uncharacterized protein
- STRING: Solyc03g111260.2.1 — (Solanum lycopersicum)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Sequences
CDS Sequence:
- >DCAR_026220|Daucus_carota|Trihelix|DCAR_026220
ATGGCTATTGCTTTCAGTACAATGCCACTTTATCCATACAAGCTTTGGCATAGGAGGCCTAATTGTAAAAAGAGCTTCATTTCTTGCTCACCGCCCTCTACTACTACTAGTACTGCTAATGCAGGAGGTGTGATGCTGCCTGGTCATTGTGATTTACATAAGATTGCTGTCCATGGCCTTGGTACAGGTAGAATTGGATCAAAAGGACCTCAAAAAAGATCTGGAAGATTAGAAGGGGCAGGGAAGAGCATGGAAGATTCTGTAAAACGAAAGATGGAACATTTTTATGAAGGATCTGATGGCCCGCCTCTACGTGTTCTGCCAATTGGTGGCCTGGGAGAAATAGGAATGAATTGCATGCTTGTTGGAAATTTTGATCGGTATATTATGATTGATGCTGGTATCATGTTTCCAGACGATGATGAGCTTGGTATCCAAAAAATCATTCCTGATACGACATTTATTAAGAAATGGAGCCACAAAATTGAAGCGGTTATCATAACGCATGGTCACGAAGATCACATTGGTGCGTTGCCTTGGGTTATACCAGCTCTGGATCCACGCACACCAATATTTGCATCATCTTTCACAATGGAGCTTATCAAGAGGCGGTTGAAGGAGTTTGGGATCTTTGTTCCATCTAGGCTCAAGACATTTAGGACAAAAAGGAAATTTAATGCCGGGCCATTTGAAATTGAACCCATTAGAGTCACCCATTCTATACCTGATTGTTCTGGACTGGTTCTCCGTTGTGCAGACGGGACAATTCTTCACACAGGGGACTGGAAGATTGATGAAACACCACTGGATGGCAAAGTTTTTGACCGTGAAGGCCTGGAGGAACTCTCTAAAGAAGGTGTCACATTGATGATGAGTGACTCAACAAACATACTGTCACCTGGGAGGACTTTTAGTGAAGCTGTTGTTGCAAATTCACTGTTGAGACATATATCTGCTGCGAAAGGAAGAGTTATCACCACTCAGTTTGCATCAAATATTCATCGACTTGGTAGCATTAAGGCAGCAGCTGACTTGACTGGCAGAAAGCTGGTGTTTGTGGGGATGTCATTAAGGACGTACCTTGATGCCGCATATAAAGATGGAAAGGCACCAATTGACCCATCAACTTTGGTAAAAATAGAAGATATTGATGCTTATGCCCCAAAAGATTTGCTGATCGTGACAACAGGTTCCCAAGCAGAACCACGTGCAGCATTGAATCTTGCATCGCATGGAAGTAGTCATTCACTCAAATTGAGCAAAGAAGATGTGATTTTATACTCTGCCAAGGTAATCCCTGGCAATGAGAATCAAGTGATGAAAATGCTAAATCGTGTAGCAGAGATTGGATCAACTATAGTGATGGGAAAGCACGAGCAGCTGCATACATCAGGTCATGCTTATCGGGAGGAGTTGGAGGAAGTGATAAGAATTGTAAAGCCACAACATTTTTTACCAATCCATGGAGAACTCTTATTCCTGAAAGAACATGAACTGTTAGGAAGAGCCAATGGCATTCAACACACTACTGTTATAAAGAATGGGGAGATGCTTGGGGTTTCACACCTAAGAAACAGAAGGGTTTTGTCGAATGGTTTTGTATCTCTAGGAAAAGAAAATTTGCAGTTGATGTACAGTGATGGTGACAAAGCATTTGGTACTTCTACTGATCTCTGTGTTGATGAAAGACAAAGAATCGCCACAGATGGTATAATAGTTGTCAGCATGGAAATCATGCGCCCTCAAACCACTGACGGATTTGAAAAGGCCTTGAAGGGTAAAATAAGAATAACCACGCGTTGCTTATGGCTTGATAAAGGCAAGTTGTTAGATGCACTTCACAAGGCAGCACATGCTGCACTGTCGAGTTGTCCTGTAAATTGTCCTCTTGCCCACATGGAAAGAATTGTTTCCGAGGTTTTGAGGAAAATGGTCAGGAAATACAGTAGTAAAAGGCCCGACATCATTGCAATTGCTATTGAAAATCCAGCGGCGGTGCTGGCTGACGAGATCAATGAAAAGTTATCAGGGAGGTCACATGTTGATTCTGGATTACGGGCAATGAGAAAAGGGATTAATGAACTTGCCAAAAACAAAAAATCAAATAGGAGGCGTGATGAAAAAGACAATGACCACACATATCCAGTACACACCAGGCCAGAAGAAACTGAAGAGTATGGTACTGAAATTGAGAGACTTCTGCCAGAAGAAGAAACTTGTTCAAACTCTGGATTATCAGACACTAATTCTGAGGATTTTGATGACATCCAGAAATCATCTATGGTTTTAACTGCAGTTGATAGTCTGGAAGATGGTAGCAATGGTGCTCCCACAGTTGAGGAATGCAGGGAGATGGCTAAGAAGGCAAGTAGTGAAGGTGACTCCCCAAAATCTTCGAAGTCTGCAAAGAGAAACAAATGGAAACCCGAAGAAGTTAAGAAACTGATCCAATTTCGTGGGGAACTAAATAGTAGATTTCAAGTTATAAAGGGGAGGATGGCCCTTTGGGAGGAGATATCTGCAAGCCTATTGGCTTGTGGAATATACCGAAGTCCAGGACAATGTAAATCTTTATGGGCATCTCTGACTCAGAAATACGAGGAAAGCAAGAAAGACATGGAAAGTGAGAAGAGCTGGTTATATTTCGAAGACATGAATAATATATTATTGAAGTTGGAGGCAACACCTACAAAATAA
Protein Sequence:
- >DCAR_026220|Daucus_carota|Trihelix|DCAR_026220
MAIAFSTMPLYPYKLWHRRPNCKKSFISCSPPSTTTSTANAGGVMLPGHCDLHKIAVHGLGTGRIGSKGPQKRSGRLEGAGKSMEDSVKRKMEHFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNFDRYIMIDAGIMFPDDDELGIQKIIPDTTFIKKWSHKIEAVIITHGHEDHIGALPWVIPALDPRTPIFASSFTMELIKRRLKEFGIFVPSRLKTFRTKRKFNAGPFEIEPIRVTHSIPDCSGLVLRCADGTILHTGDWKIDETPLDGKVFDREGLEELSKEGVTLMMSDSTNILSPGRTFSEAVVANSLLRHISAAKGRVITTQFASNIHRLGSIKAAADLTGRKLVFVGMSLRTYLDAAYKDGKAPIDPSTLVKIEDIDAYAPKDLLIVTTGSQAEPRAALNLASHGSSHSLKLSKEDVILYSAKVIPGNENQVMKMLNRVAEIGSTIVMGKHEQLHTSGHAYREELEEVIRIVKPQHFLPIHGELLFLKEHELLGRANGIQHTTVIKNGEMLGVSHLRNRRVLSNGFVSLGKENLQLMYSDGDKAFGTSTDLCVDERQRIATDGIIVVSMEIMRPQTTDGFEKALKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLAHMERIVSEVLRKMVRKYSSKRPDIIAIAIENPAAVLADEINEKLSGRSHVDSGLRAMRKGINELAKNKKSNRRRDEKDNDHTYPVHTRPEETEEYGTEIERLLPEEETCSNSGLSDTNSEDFDDIQKSSMVLTAVDSLEDGSNGAPTVEECREMAKKASSEGDSPKSSKSAKRNKWKPEEVKKLIQFRGELNSRFQVIKGRMALWEEISASLLACGIYRSPGQCKSLWASLTQKYEESKKDMESEKSWLYFEDMNNILLKLEATPTK*