Gene Details:
- Gene ID: Cotton_A_03563_BGI-A2_v1.0
- Gene Family: Trihelix Family
- Description: Trihelix Family protein
- Species: Gossypium arboreum
- Source: Trihelix family gene from PlantTFDB
Protein Features:
Annotation Proteins:
- Refseq: XP_017633784.1 — PREDICTED: uncharacterized protein LOC108476171
- TrEMBL: A0A1U8K3U4 — A0A1U8K3U4_GOSHI; uncharacterized protein LOC107913165
- STRING: EOY23024 — (Theobroma cacao)
Family Introduction:
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature:
- Systematic analysis of GT factor family of rice reveals a novel subfamily involved in stress responses. DOI: 10.1007/s00438-009-0507-x ; PMID: 20039179
Sequences:
CDS Sequence:
- >Cotton_A_03563_BGI-A2_v1.0|Gossypium_arboreum|Trihelix|Cotton_A_03563_BGI-A2_v1.0
ATGGGTGGCAATAAAGGAGATGCAACCAAGAAGCAAACACCCCAGCCAACTCAACAACTCTCATCTTCTCCCAAAGAGCCCCTTGAGGAATCTTCAGAATCAAGGCAAAAGCATCTCCAGCAACCATCAGCTGTTGTGGTCACAGCGACTGGACCTCCTTTCATATCTGCGCCTTTATACGTCCCAACTGGTGCGACTTCTTCTCCCTTTGAACAGCAATTTGAGTCTGTCAATCCCAAGAGATCTCGATACAACAGTGGCCAATGGAAACTGCTCCCATCATCATCTTCCCTACAGTCGCAAGCCCAAATGGCTATAATCACCAGCGAATCAAGCCCATCACCCACAAATCCCATTAACCCTCAAACTCAGGCTCAGACCACAGCAGCTTCCTCCTCAGACGCAGCCTCATCTCCACCCCACTCTCCTCTCCCATCCACAACCTCGGGCCAGGAAACCAACAAACCGGAAGATCAGCAATTTCATCACCAATTCAGAAAGGGAAAATATGTGAGCCCCGTCTGGAAACCGAATGAAATGTTGTGGTTAGCAAGGGCTTGGAGGATTCAATATCAAGGAGGGTCTGATGCGTCTGGCTCTTCTTCAAGAAGTGGCCACCAAGAGATTGGTCCTTTTACAGGCAGCGATCTTGCAGTCCAATCAACAAGAGGCAAGACCAGGGCTGACAAAGATAGGGAAGTAGCTGAGTTTTTAAACAAACATGGAATCAATAGGGATGCCAAAACTGCTGGTACTAAGTGGGATAATATGTTAGGTGAGTTTAGAAAAGTTTATGAATGGGAGAGAGGGGGAGAAAGGGAACAAGTTGGCAAGAGTTACTTCAGACTTTCTCCTTATGAGAGAAAACTGCATAGATTGCCAGCTTCCTTTGACGAGGAAGTCTTCGAGGAGTTGTCTCATTTCATGGGGCCCCGCATGAGAACTTCACAAAGCAGAGGAGCTTCTGCGATTGCTTCAAGTGATGATGGTCGGTCGGTTCTTTCTGGTCCTAGACCGCTTCCTCCTGCTCCTCCATTCAAAGTAGATGAACTTCCTCTCTCAGTGAGGACAAAACAACTGGTAACGACTACCGGAGGAGATGCTTTCTTTCATGGAACAAGAGGAAGTCTGGTAGGGTTCGACACTTCATTGGACGTTGGGTTAGGTCTTCCTTCTTCATCTTCCAAGGAACTACGTAGAATTGGGAAGATAAGAATGACATGGGAGGAGTCAGTAAGTTTATGGGCGGAAGAAAGCGAGCACCATAGAGGAAGAGTGAGACTTCAAGGTTCAAGCTTTTTAAACGCAGATGAACTCACATTCTTTGATGATTCCGTGGTTGCTTGCACAATGGAAGCCTTTGAAGATGGCCCTCTAAAAGGTTTCTCTGTTGATAGATTCGTCAATGGACAGCAAGTCAAAGTGTTTGGTAGGAGAAAGTCATCCGCAGCTTCTGCATCTTCTGTTACAGGCATGTTTGTTAATGTTACTAATTCTGAAACTTTTCAGGAATCTCCATCTAAAAGTCACTCTCTTTCTCTTTCTATGAACCAGGTTTCACTGAAAGAGCGCAGCTTCCCTTTGCAGAACCCTCTATCAGATGTAAGTCCAATTAAAACTGTTGTTTCTAGCTTGAACATTGCAATAGAATCTAAGAAATATTTTGACTTCTCGATGGCTACCTCGGAGAAAGTGCTTTTATAG
Protein Sequence:
- >Cotton_A_03563_BGI-A2_v1.0|Gossypium_arboreum|Trihelix|Cotton_A_03563_BGI-A2_v1.0
MGGNKGDATKKQTPQPTQQLSSSPKEPLEESSESRQKHLQQPSAVVVTATGPPFISAPLYVPTGATSSPFEQQFESVNPKRSRYNSGQWKLLPSSSSLQSQAQMAIITSESSPSPTNPINPQTQAQTTAASSSDAASSPPHSPLPSTTSGQETNKPEDQQFHHQFRKGKYVSPVWKPNEMLWLARAWRIQYQGGSDASGSSSRSGHQEIGPFTGSDLAVQSTRGKTRADKDREVAEFLNKHGINRDAKTAGTKWDNMLGEFRKVYEWERGGEREQVGKSYFRLSPYERKLHRLPASFDEEVFEELSHFMGPRMRTSQSRGASAIASSDDGRSVLSGPRPLPPAPPFKVDELPLSVRTKQLVTTTGGDAFFHGTRGSLVGFDTSLDVGLGLPSSSSKELRRIGKIRMTWEESVSLWAEESEHHRGRVRLQGSSFLNADELTFFDDSVVACTMEAFEDGPLKGFSVDRFVNGQQVKVFGRRKSSAASASSVTGMFVNVTNSETFQESPSKSHSLSLSMNQVSLKERSFPLQNPLSDVSPIKTVVSSLNIAIESKKYFDFSMATSEKVLL