Information report for Cla019268
Gene Details
Functional Annotation
- Refseq: XP_015866975.1 — uncharacterized protein LOC107404538
- Swissprot: Q84W56 — RNJ_ARATH; Ribonuclease J
- TrEMBL: A0A1S3CLZ6 — A0A1S3CLZ6_CUCME; ribonuclease J isoform X1
- TrEMBL: A0A1S3CN32 — A0A1S3CN32_CUCME; ribonuclease J isoform X2
- STRING: XP_008464473.1 — (Cucumis melo)
- GO:0009658 — Biological Process — chloroplast organization
- GO:0009942 — Biological Process — longitudinal axis specification
- GO:0060918 — Biological Process — auxin transport
- GO:0009507 — Cellular Component — chloroplast
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Actinidia chinensis: Achn114091
- Cucumis melo: MELO3C026230P2, MELO3C026230P1
- Cucumis sativus: Cucsa.157420.1
- Gossypium arboreum: Cotton_A_19924_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D07G0523
- Juglans regia: WALNUT_00005131-RA
- Manihot esculenta: Manes.14G052700.2.p, Manes.14G052700.1.p
- Populus trichocarpa: Potri.012G095800.1, Potri.015G093600.2, Potri.015G093600.1
- Ricinus communis: 30147.m014528
- Sesamum indicum: XP_011073024.1, XP_011073026.1
- Vitis vinifera: GSVIVT01008515001
- Ziziphus jujuba: XP_015866975.1, XP_015881808.1
Sequences
CDS Sequence:
- >Cla019268|Citrullus_lanatus|Trihelix|Cla019268
TCGAAAGTACCTCGAAAAAGACCAGGAAGATTGGAAGGTGCTAGAAGAAGCATGGAAGACTCTGTTCAGCGCAAGATGGAACAATTTTATGAAGGTTCAGATGGTCCACCTCTCCGAGTTCTTCCAATTGGTGGCCTTGGTGAAATTGGGATGAATTGTATGCTTGTTGGGAATTATGACCGCTACATCCTGATTGATGCTGGCGTCATGTTTCCTGACCATGATGAGCTTGGTGTCCAGAAAATTATACCTGATACCACATTTATCAAAAGATGGAGTCACAAAATCGAAGCTGTTGTTATTACACATGGCCATGAAGATCACATTGGTGCGTTGCCTTGGGTAATTCCCGCTTTGGATTCTCATACACCAATATATGCTTCTTCCTTTACAGTGGAGCTTATAAAAAAGCGTCTGAAGGAAAATGGGATTTTTGTTCCTTCTCGACTTAAGGTATTTAAGATGAAAAAGAGATTCACAGCTGGGCCATTTGAAATAGAGCCAATTAGGGTTACCCATTCCATTCCGGATTGTTGTGGATTAGTTCTTCGATGTGCTGATGGTATAATTCTTCATACGGGAGACTGGAAGATCGATGAATCGCCATTGGATGGTAAAGTCTTCGATCGAGAAACTTTGGAAGAACTATCAAAAGAAGGAGTGACTCTTATGATGAGTGACTCAACAAATGTACTATCTCCTGGAAGGACTATTAGTGAGTCTGTGGTAGCAGATGCGCTTTTAAGACGTATCTCTGCCGCTAAAGGAAGGGTCATCACGACTCAGTTTGCTTCAAATATACACCGCCTTGGAAGTGTGAAAGCAGCCGCGGATTTAACGGGTAGAAAGTTGGTATTTGTTGGCATGTCTTTACGGACATATCTGGATGCAGCCTGGAAAGATGGGAAGGCACCAATTGATCCATCGACCTTGGTAAAAGTGGAGGACATTGATGCCTATGCTCCAAAAGATTTATTGATTGTCACAACTGGCTCACAAGCAGAACCACGTGCTGCCCTTAATCTTGCATCCTATGGAAGTAGTCACTCTCTCAAACTGAGCAAGGAAGACATGATTTTGTATTCAGCCAAGCCATTTTGCTTTGAACTACAGACCCCCCTTCCCCCTATGTGGGATTATTTGGTTATGGAAATCTTGCGACCTCAAAGTGTAGATGGTTCAAACGAGACTGGCATCCGAGGAAAGCTAAGGATCACTACAAGATGTTTATGGCTTGACAAGGGGAAGCTTTTAGATGCACTTCATAAAGCCGCTCATGCAGCACTTTCAAGCTGCCCGGTGAATTGTCCTCTAGCTCACATGGAAAGAACCGTGGCTGAGCTTTTGAGGAAGATGGTTAGAAAATATAGTGGTAAGAGGCCTGAAGTCATAGTCATGGCTGTGGAGAACCCTGGAGGAGTTCTATCCGAAGAGCTTGGAGCAAGGCTTTCAGGCAAGTCCAATACTGGATTTGGGATGTCAGCATTGAGAAAAGCAGTTGATGGACAACCAACTAAGAGCCACGTAAACAGCACAAGACCAGATGGAAATGACGATTTGCATTCCGAGGAGTCTCAAGGTTATTATTTGGAACCTGGAAGACTACTTCCTGAAGATGACTACGATACCTCGAGCTCGAACTTGACAGAGACACAATCCTTTGATAACGAGGGTTTGGAGGATTTCTGGAGACCATTTATCACGCCATCCTCTCCTGCTAAAGAATTGGCAAAGGATAACGAAGGTTCTGTTCAACAATCAAAAAATATGTTGGAGATTACAAACGAACGTGAAGAAGTTAGTGACGACAAGTCACTGAAAACCTCAAATTCTGACGTGAAGCCTCTGAAACGCAATAAATGGAAACCTGAAGAGATCAAGAAACTTATTAAATTGCGGGGGGAATTGCATGCCAGGTTTCAAGTGGCCAGGGGACGAATGGCATTATGGGAAGAGATATCCAATGGTATGTCGGCTGATGGAATTAATCGGAGTCCCGGACAGTGCAAATCTCTGTGGGCATCTCTGGTTCAGAAATTTGAGGTTTGTTCTTCTGTTTCTACTTTCAATTTTGAACTTGCTCTGCCCCTTTAA
Protein Sequence:
- >Cla019268|Citrullus_lanatus|Trihelix|Cla019268
SKVPRKRPGRLEGARRSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDHDELGVQKIIPDTTFIKRWSHKIEAVVITHGHEDHIGALPWVIPALDSHTPIYASSFTVELIKKRLKENGIFVPSRLKVFKMKKRFTAGPFEIEPIRVTHSIPDCCGLVLRCADGIILHTGDWKIDESPLDGKVFDRETLEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRRISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSLKLSKEDMILYSAKPFCFELQTPLPPMWDYLVMEILRPQSVDGSNETGIRGKLRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLAHMERTVAELLRKMVRKYSGKRPEVIVMAVENPGGVLSEELGARLSGKSNTGFGMSALRKAVDGQPTKSHVNSTRPDGNDDLHSEESQGYYLEPGRLLPEDDYDTSSSNLTETQSFDNEGLEDFWRPFITPSSPAKELAKDNEGSVQQSKNMLEITNEREEVSDDKSLKTSNSDVKPLKRNKWKPEEIKKLIKLRGELHARFQVARGRMALWEEISNGMSADGINRSPGQCKSLWASLVQKFEVCSSVSTFNFELALPL