Gene Details:

• Gene ID: Cc05_g08380
• Gene Name: GSCOC_T00016856001
• Gene Family: Trihelix Family
• Description: Trihelix Family protein
• Species: Coffea canephora
• Source: Trihelix family gene from PlantTFDB

Protein Features:

• Pfam:  PF13837
• PROSITE profile:  PS50090
• InterPro:  IPR017877

Annotation Proteins:

• Refseq:  XP_027063311.1  — trihelix transcription factor ASIL2-like
• TrEMBL:  A0A068V5U4  — A0A068V5U4_COFCA; Uncharacterized protein
• STRING:  XP_009760894.1  — (Nicotiana sylvestris)

Gene Ontology:

• GO:0003677  — Molecular Function — DNA binding

Family Introduction:

• GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.

Literature:

• Systematic analysis of GT factor family of rice reveals a novel subfamily involved in stress responses.   DOI:  10.1007/s00438-009-0507-x ;  PMID:  20039179

Sequences: