Information report for Cc03_g13140
Gene Details
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Functional Annotation
- Refseq: XP_027165522.1 — ribonuclease J isoform X3
- Swissprot: Q84W56 — RNJ_ARATH; Ribonuclease J
- TrEMBL: A0A068UQY7 — A0A068UQY7_COFCA; Uncharacterized protein
- STRING: XP_002511207.1 — (Ricinus communis)
- GO:0009658 — Biological Process — chloroplast organization
- GO:0009942 — Biological Process — longitudinal axis specification
- GO:0060918 — Biological Process — auxin transport
- GO:0009507 — Cellular Component — chloroplast
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Sequences
CDS Sequence:
- >Cc03_g13140|Coffea_canephora|Trihelix|Cc03_g13140
ATGGCTGCTATCAGTTTCAGTGCAGTTTCACTCTATCCTTATGCTCACAAGGGTTCTCTATCTCGAGCAGCTAACCCAAATCCTAGTAGACAATGCATTTCTTGCTGTGGACCTTCGCATTCTACTTCAACTATAGGTTCACGTGGTGGGTCGAGAGAACCTCATAAAAGATCTCGAGGAAGAGCCGAGGGACCTCGAAAAAGTATGGAAGATTCTGTTCAACGTAAGATGGAACAGTTCTATGAAGGTTCTGATGGCCCACCGTTGCGTGTTCTTCCAATTGGTGGTTTGGGAGAAATTGGAATGAATTGTATGCTTGTTGGAAATTTTGATCGGTATATTTTGATCGATGCTGGTGTGATGTTCCCTGGCTATGATGAGCTTGGCGTCCAGAAAATCATACCTGATACCACGTTTATCAAGAAATGGAGCCACAAAATTGAAGCAGTTGTAATAACCCATGGTCATGAAGACCACATTGGTGCGTTGCCTTGGGTAATTCCTGCTTTGGATGCACGCACGCCTATATTTGCATCTTCCTTTACAATGGAGCTTATCAAGAAGAGATTGAAGGAGTTTGGGATTTTTATTCCTTCTAGGCTCAAGATATTTAAAACAAAAATGAGATTTGTTGCTGGGCCATTTGAGGTGGAACCGATTAGGGTTACACATTCCATTCCAGATTGTTGTGGATTGGTTCTTCGCTGTGCTGATGGTACTATTCTTCACACAGGGGACTGGAAGATTGATGAGACACCATTAGATGGGAAAGTATTTGACCGTGGAGCTTTAGAAGAGCTTTCTAAAGAAGGAGTTACCTTGATGATGAGTGATTCAACAAATGTACTCTCGCCTGGAAGGACACTTAGTGAGACTGTTGTAGCGGATGCATTGTTGCGTCGTATTTCAGCTGCTAAAGGCAGGGTTATCACTACCCAATTTGCATCAAATATTCATCGTCTCGGAAGTGTGAAAGCTGCAGCTGACTTGACCGGCAGAAAATTGGTTTTTGTTGGAATGGCATTGAGGACATATCTGGATGCTGCATGGAAAGATGGAAAGGCATCTATTGATCCATCAACACTGGTGAAAGTGGAAGACATTGATGCTTATTCACCCAAAGATTTACTCATTGTAACTACTGGCTCTCAAGCAGAACCACGTGCTGCACTGAATCTTGCATCATATGGAAGTAGCCATTCACTCAAACTGACACAAGAGGATTTGATTTTGTATTCTGCTAAGGTTATACCTGGTAACGAAACTCGGGTGATGAAAATGCTTAATCGTATATCAGACATAGGGTCAGCTATTGTGATGGGCAAGAATGAGTACTTGCACTCGTCTGGTCATGCTCATCGTGAAGAATTGGATGAAGTGCTTAAAATTGTGAAGCCACAACATTTTCTACCCATTCATGGGGAGCTTTTATTCCTAAAAGAGCATGAATTGTTGGGAAAATCAACTGGCATTCGGCATACTGTGGTCATAAAGAATGGAGAGATGCTTGGTGTCTCACACCTGAGGAACAGAAGAGTTCTATCTAATGGTTTCACTTCCCTGGGGAAAGAAAACCTACAGTTGATGTATAGTGATGGTGACAAAGCATTTGGGACATCTACCGAGCTTTGCATTGATGAGAGACTTAGGATAGCATCAGATGGTATTATAGTCATCAGTATGGAAATTTTACGCCCCCAGGCTTCAAACAGTCTAACGGAGAAAACACTAAAAGGGAAGATAAAAATTACCACACGTTGCTTATGGCTTGACAAAGGAAAACTTTTAGATGCACTGCACAAAGCTGCACATGCTGCACTATCAAGTTGTCCTGTAAACTCACCTCTGGTTCACATGGAGAGGACTGTTTCTGAAGTTCTGAGAAAAGTAGTTAGGAAATATAGTAGCAAAAGACCTGAAGTCATTGCAATAGCTTTAGAAAACCCAGCAGGAGTCCTAGCTGATGACATAAATGGAAAGCTATCGGAAAGGTCACGTGTGGGTTTAGGAATTTCAACATTGAGAAAAGCAGTTGATGGGCATCAAAGAAAGCGACGACCTAATGGGGCACAGGAGGTTGATGACAGTGACAGCCATGCACACTTAAGAAGCATCATGCAACAAGATTTAGAAGATAATGAGATGGATTTTGATAAACTGCTATCCAAGGATGAAGCTAATTCAGTTTCTACATCATCGAAGGCATTCTCTTCAAATGGTGCAGAATCAGACAACTTTTGGAAATCATTTGTACAAATACCAACAAACAATGTGGTGGAAGAAGGTAATACCAGCTTGCAGTTACAGAAGGAACACTATGAAAATTCAGAAATAGACAGCGGTGAGCTTGATTCAGGCCTACCAAAATCGGAACTTAAGTCTTCCAAGTCTGTGAAACGAAACAAATGGAAGCCTGAAGAGATCAAAAAGCTAATTCGAATGCGTGGGGAACTTCATAACAGATTCCAAGTTGTCAAGGGTCGAATGGCTCTCTGGGAAGAAATATCTTCCAATTTGTTATCTGGTGGAATAAGTCGAAGCCCAGGACAATGCAAATCTCTGTGGGCATCTTTGGTTCAGAAATATGAGGAAAGTAAGACTGATTCTAAAAGCCGGGAAATGTGGCCTTACTTTGATGACATGAACACAATCTTTGTCAGACATTGA
Protein Sequence:
- >Cc03_g13140|Coffea_canephora|Trihelix|Cc03_g13140
MAAISFSAVSLYPYAHKGSLSRAANPNPSRQCISCCGPSHSTSTIGSRGGSREPHKRSRGRAEGPRKSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNFDRYILIDAGVMFPGYDELGVQKIIPDTTFIKKWSHKIEAVVITHGHEDHIGALPWVIPALDARTPIFASSFTMELIKKRLKEFGIFIPSRLKIFKTKMRFVAGPFEVEPIRVTHSIPDCCGLVLRCADGTILHTGDWKIDETPLDGKVFDRGALEELSKEGVTLMMSDSTNVLSPGRTLSETVVADALLRRISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMALRTYLDAAWKDGKASIDPSTLVKVEDIDAYSPKDLLIVTTGSQAEPRAALNLASYGSSHSLKLTQEDLILYSAKVIPGNETRVMKMLNRISDIGSAIVMGKNEYLHSSGHAHREELDEVLKIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTVVIKNGEMLGVSHLRNRRVLSNGFTSLGKENLQLMYSDGDKAFGTSTELCIDERLRIASDGIIVISMEILRPQASNSLTEKTLKGKIKITTRCLWLDKGKLLDALHKAAHAALSSCPVNSPLVHMERTVSEVLRKVVRKYSSKRPEVIAIALENPAGVLADDINGKLSERSRVGLGISTLRKAVDGHQRKRRPNGAQEVDDSDSHAHLRSIMQQDLEDNEMDFDKLLSKDEANSVSTSSKAFSSNGAESDNFWKSFVQIPTNNVVEEGNTSLQLQKEHYENSEIDSGELDSGLPKSELKSSKSVKRNKWKPEEIKKLIRMRGELHNRFQVVKGRMALWEEISSNLLSGGISRSPGQCKSLWASLVQKYEESKTDSKSREMWPYFDDMNTIFVRH*