Gene Details:

• Gene ID: Cagra.4082s0018.1.p
• Gene Family: Trihelix Family
• Description: Trihelix Family protein
• Species: Capsella grandiflora
• Source: Trihelix family gene from PlantTFDB

Protein Features:

• Pfam:  PF13837
• PROSITE profile:  PS50090
• InterPro:  IPR017877

Annotation Proteins:

• Refseq:  XP_006288194.1  — trihelix transcription factor GT-3a
• Swissprot:  Q9SDW0  — TGT3A_ARATH; Trihelix transcription factor GT-3a
• TrEMBL:  R0FFS4  — R0FFS4_9BRAS; Uncharacterized protein
• STRING:  Cagra.4082s0018.1.p  — (Capsella grandiflora)

Gene Ontology:

• GO:0005634  — Cellular Component — nucleus
• GO:0042802  — Molecular Function — identical protein binding
• GO:0043565  — Molecular Function — sequence-specific DNA binding

Family Introduction:

• GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.

Literature:

• Systematic analysis of GT factor family of rice reveals a novel subfamily involved in stress responses.   DOI:  10.1007/s00438-009-0507-x ;  PMID:  20039179

Sequences: