Information report for C.cajan_08519
Gene Details
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Functional Annotation
- Refseq: XP_020210778.1 — ribonuclease J isoform X1
- Swissprot: Q84W56 — RNJ_ARATH; Ribonuclease J
- TrEMBL: A0A151TR91 — A0A151TR91_CAJCA; Ribonuclease J
- STRING: GLYMA04G37020.2 — (Glycine max)
- GO:0009658 — Biological Process — chloroplast organization
- GO:0009942 — Biological Process — longitudinal axis specification
- GO:0060918 — Biological Process — auxin transport
- GO:0009507 — Cellular Component — chloroplast
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Cicer arietinum: XP_004500652.1
- Glycine max: Glyma.04G194600.1.p, Glyma.06G171400.1.p, Glyma.06G171400.4.p, Glyma.06G171400.3.p, Glyma.17G128500.4.p, Glyma.17G128500.1.p, Glyma.17G128500.8.p, Glyma.06G171400.2.p
- Gossypium hirsutum: Gh_D07G0523, Gh_A07G0459
- Lotus japonicus: Lj0g3v0261399.1
- Medicago truncatula: Medtr3g089020.1
- Ricinus communis: 30147.m014528
- Vitis vinifera: GSVIVT01008515001
Sequences
CDS Sequence:
- >C.cajan_08519|Cajanus_cajan|Trihelix|C.cajan_08519
ATGGCCGCTCTCACCTCTCTCTCCCTCTCTCTCCGCCCTCTCTCTCTCCGCCTCAAGCCAACCGCGACCCTCTCCGCCGCACTCCCAGGAAGCACCGATGGAGCCAAAACCAAAGCGCCGCGGAGAAGAGCGGGGCGAATAGAAGGACCTAGAAAGAGCATGGAGGACTCCGTTCAGCGCAAGATGGAGCAGTTCTACGAAGGCTCCGACGGGCCTCCGCTTCGCGTTCTCCCTATCGGCGGTTTGGGGGAGATTGGGATGAATTGCATGCTCGTCGGGAACCATGACCGTTATATCCTCATTGACGCTGGTGTCATGTTTCCAGACTATGATGAACTTGGAGTTCAGAAGATTATACCTGATACGACTTTTATAAGGAAGTGGAGCCACAAGATTGAAGCTCTCGTCATAACACATGGTCATGAAGATCATATTGGTGCGTTGCCTTGGGTCATCCCAGCATTGGATTCCAATACACCAATTTTTGCATCATCCTTTACAATGGAGCTTATTAGAAAACGTTTGAAGGAACATGGTATTTTTGTTCCATCTAGGCTCAAAGTATTTAGAACCAGGAAAAAGTTTGTGGCTGGGCCATTTGAGATAGAACCTATAAGGGTGACCCATTCCATTCCTGATTGTTGTGGACTAGTTCTTCGTTGTTCTGATGGTACAATTCTTCACACTGGGGACTGGAAGATTGATGAGACACCACTAGATGGGAAAGTTTTTGATCGTGAAGCTTTAGAGGAACTCTCTAAAGAAGGAGTAACATTGATGATGAGTGATTCAACAAATATACTCTCACCTGGTAGGACAACCAGTGAATCTGTTGTAGCAGATGCATTATTGAGACATATTTCAGCTTCTAAAGGAAGGGTCATTACTACTCAATTTGCGTCAAATTTACATCGGCTTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGCAGAAAGTTGGTATTTGTTGGCATGTCTTTAAGGACGTATTTAGATGCAGCTTGGAAGGATGGAAAGGCTCCAATTGATCCATCCACTCTGGTGAAAGCAGAGGATATTGATGCTTATGCTCCAAAGGATCTGCTAATTGTAACCACAGGTTCTCAAGCAGAACCACGTGCTGCCTTGAACCTTGCATCTTACGGAAGTAGTCATGCTTTCAAACTAACCAAGGAAGATGTCGTTTTGTATTCAGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTGATGGAAATGCTAAACCGCATATCAGAGATTGGATCAACGATAGTTATGGGAAAAAATGAAAATCTGCACACATCTGGTCATGCATATCGTGGAGAATTGGAAGAAGTACTTAGAATAGTGAAGCCACAACATTTTCTTCCCATCCATGGAGAGCTTTTGTTCCTGAAGGAACATGAGTTACTTGGAAAATCAACTGGAATTCGGCACACTGCTGTTATTAAGAATGGGGAGATGCTTGGTGTTTCACATTTGAGAAATAGAAGAATCCTTTCTAATGGTTTCATTTCCCTTGGAAAAGAGAATTTACAGTTGAAATATAGTGATGGCGATAGAGCATTTGGTACATCTAGTGAACTCTTCATTGATGAAAGATTGAGAATCGCATTAGATGGCATCATTGTCATTAGCATGGAAATATTTCGCCCTAAAATTTTAGATAGTTTGACTGAGAACACGTTAAAAGGGAAGATAAGGATTACCACAAGATGCTTATGGCTTGATAAAGGGAAGCTGATGGATGCACTCTACAAAGCTGCCCGTGCAGCTCTTTCAAGCTGCCCTGTAAAGAGTCCACTGGCTCACATCGAAAGAACTGTGTCTGAGGTATTGAGGAAGATGGTGAGGAAATACAGTGGTAAACGACCTGAAGTTATTGCCATTGCCATAGAAAACCCTTCAGGCATTCTTGCTGATGAGATGAACACAAAATTGTCTGGCAAAAAAGCCCATGTGGGTCTTGGAATATCATCAGTAAGAAAAGCAGTGGATGAGCATGAGAAGGGAAATCCGTCCACCACACTGCAAGCTAGAGATGATAGTATTGATAATGCAAGTGTAGCTGAGCGTGATTTATCTGAGGGAGACAACTCTGCAAGTGGAGCTGAGGGTGATTTATCTCAGTCAGAGGAATCAGAAGAATTTTGGAAACCATTCGTTACATCGTTGCCAATTGAGGAGTCAATTGGTGCTGACAGTGGTTATGTTTCACAAAAGGAGCATAAATCCAATTTGAAGAAAGATGATTCTAAAGACATGGATGAAGCCAAGTATGAAGAAACATGTAATTCTGAACCCAAGTCTTCAAAATCAGTAAAGAGAAACAAATGGAAAACTGAAGAAATTAAGAAGCTGATTGGTATGCGTGGGGAACTACGTGACAGATTTCAAGTTGTGAAGGGAAGGATGGCCCTCTGGGAAGAGATATCTCAAAAATTGTTGGCTGATGGGATCAGCAGAAGTCCTGGACAATGCAAATCTCTGTGGACATCTTTGGCACTGAAATATGAGGGGATCAAGAAAGAGAAGGATGGTGAGAAAAGTTGGCAGTATTTTGAGGACATGGAAAGGATAATGTCTGATAAAGAAATCCCTGCAGCAAAATGA
Protein Sequence:
- >C.cajan_08519|Cajanus_cajan|Trihelix|C.cajan_08519
MAALTSLSLSLRPLSLRLKPTATLSAALPGSTDGAKTKAPRRRAGRIEGPRKSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNHDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWSHKIEALVITHGHEDHIGALPWVIPALDSNTPIFASSFTMELIRKRLKEHGIFVPSRLKVFRTRKKFVAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNILSPGRTTSESVVADALLRHISASKGRVITTQFASNLHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHAFKLTKEDVVLYSAKVIPGNESRVMEMLNRISEIGSTIVMGKNENLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVSHLRNRRILSNGFISLGKENLQLKYSDGDRAFGTSSELFIDERLRIALDGIIVISMEIFRPKILDSLTENTLKGKIRITTRCLWLDKGKLMDALYKAARAALSSCPVKSPLAHIERTVSEVLRKMVRKYSGKRPEVIAIAIENPSGILADEMNTKLSGKKAHVGLGISSVRKAVDEHEKGNPSTTLQARDDSIDNASVAERDLSEGDNSASGAEGDLSQSEESEEFWKPFVTSLPIEESIGADSGYVSQKEHKSNLKKDDSKDMDEAKYEETCNSEPKSSKSVKRNKWKTEEIKKLIGMRGELRDRFQVVKGRMALWEEISQKLLADGISRSPGQCKSLWTSLALKYEGIKKEKDGEKSWQYFEDMERIMSDKEIPAAK