Gene Details:
- Gene ID: C.cajan_06940
- Gene Name: KK1_007136
- Gene Family: Trihelix Family
- Description: Trihelix Family protein
- Species: Cajanus cajan
- Source: Trihelix family gene from PlantTFDB
Protein Features:
Annotation Proteins:
- Refseq: XP_020210057.1 — trihelix transcription factor GTL2
- Swissprot: Q8H181 — GTL2_ARATH; Trihelix transcription factor GTL2
- TrEMBL: A0A151U574 — A0A151U574_CAJCA; Uncharacterized protein
- STRING: GLYMA20G36680.1 — (Glycine max)
Gene Ontology:
- GO:0045893 — Biological Process — positive regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0001158 — Molecular Function — enhancer sequence-specific DNA binding
- GO:0005516 — Molecular Function — calmodulin binding
Family Introduction:
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature:
- Systematic analysis of GT factor family of rice reveals a novel subfamily involved in stress responses. DOI: 10.1007/s00438-009-0507-x ; PMID: 20039179
Sequences:
CDS Sequence:
- >C.cajan_06940|Cajanus_cajan|Trihelix|C.cajan_06940
ATGTTCGATGGAGTACCAGACCAGTTCCACCAATTCATAACTCCAAGGACCTCACTACCACTTCACTTACCTTTCCCTCTCCATGCTTCAGCCGCCCCCAATACCACCTTCCCCACCAATTTTGATCCTTATAACCCTTCTCACAATTTGCCACTCCAACCCAATCTCTTGCACCCATTACACCATAAAGATCATGAAGAGAAGGAAGAAACTAGCACCGTCCCTATGAACTTCGAAATCCAAAGAGATCAAAGGCAACAACAACAACTACCCGAGCTCGTTGATCCATGGACTAACGACGAAGTGCTCGCACTCTTGAGGATCAGATCTAGCATGGAAAGTTGGTTCCCAGAGCTCACTTGGGAACATGTCTCAAGGAAGCTAGCAGAGCTTGGATATAAGAAGAGTGCAGAGAAGTGCAAGGAGAAGTTTGAAGAAGAGAGTAGATATTTCAACAACATTAATTTCGGCAAGAATAATAACACCACCACCACTACCAACAACAATTATCGGTTTCTTAGTGAGCTTGAACAGCTTTATCAAGGTGGGGGTGGTGATCACCAAGCTGTGACAGAAGAAAAGACTCAGCAACAAGACAAGATGGGCCAGCATGCATCGGAAGAAGGGGATTCGAGAAACGTTGTGGCAAAACAAAACGACGACGCAGTGAAAAAGACAAAGGAGCGAAAGAGGAAGAGGCCTGATAGATTTGAGATATTCAAGGGTTTTTGTGAGAGCATTGTGCACAAGATGATGGCACAGCAAGAGGAGATGCACAACAAGCTTCTCGAGGACATGATGAAGAGAGATGAAGAGAAGTTCACGAGAGAGGAAGCTTGGAAGAAGCAAGAGATGGAGAAGATGAACAAGGAGCTTGACATGATGGCACGTGAGCAAGCTATTGCAGGTGATAGACAAGCCAACATTATTCAAATCTTGAACAAATTCTCAGCCACTTCCCCTGCAAGCCAAACCCTCAAGGTAACCAGTTCTCTACATAATAATCCACTAGAGACAAATTCGATTATGAATAAAGGCAATGAGAAGGACGATACTGGGAGAAGGTGGCCAAAGGATGAAGTGTTGGCACTGATAAACCTGAGGAGCTCTAGTGTGACCAACAACAATGAGGAGAAGGAAGGGAACAAGGTCCCTCTGTGGGAGAGAATCTCACAAGGGATGTCGGAGTTGGGATATAAGAGAAGTGCAAAGAGGTGCAAAGAGAAGTGGGAGAACATAAACAAGTACTTCAGGAAAACTAAGGATGTTAATAAGAAGAGGTCCCTTGACTCGAGGACCTGTCCCTACTTTCATCAATTGAGCTGTTTGTATAATCAAGGAAAACTTGTTCTACAATCTGAAAGCCAATTGAATGATAATCCACCTGAGAATCCTGATGAGCAAGTGCCACAAGATCAAACCCAAGCTAATGAGTCTAGTTCTCCTCAAGTGGGGTCTGGTGGTTTCAGTGTGCAGCAGCAGCAGGTTGATCATGGAGGTGAGAAACCCTTGATGCAAGTACCTTCTTTGGATTTTGATCAGTTTTAA
Protein Sequence:
- >C.cajan_06940|Cajanus_cajan|Trihelix|C.cajan_06940
MFDGVPDQFHQFITPRTSLPLHLPFPLHASAAPNTTFPTNFDPYNPSHNLPLQPNLLHPLHHKDHEEKEETSTVPMNFEIQRDQRQQQQLPELVDPWTNDEVLALLRIRSSMESWFPELTWEHVSRKLAELGYKKSAEKCKEKFEEESRYFNNINFGKNNNTTTTTNNNYRFLSELEQLYQGGGGDHQAVTEEKTQQQDKMGQHASEEGDSRNVVAKQNDDAVKKTKERKRKRPDRFEIFKGFCESIVHKMMAQQEEMHNKLLEDMMKRDEEKFTREEAWKKQEMEKMNKELDMMAREQAIAGDRQANIIQILNKFSATSPASQTLKVTSSLHNNPLETNSIMNKGNEKDDTGRRWPKDEVLALINLRSSSVTNNNEEKEGNKVPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLDSRTCPYFHQLSCLYNQGKLVLQSESQLNDNPPENPDEQVPQDQTQANESSSPQVGSGGFSVQQQQVDHGGEKPLMQVPSLDFDQF