Gene Details:
- Gene ID: AT5G03680.1
- Gene Name: F17C15.100, PTL
- Gene Family: Trihelix Family
- Description: Trihelix Family protein
- Species: Arabidopsis thaliana
- Source: Trihelix family gene from PlantTFDB
Protein Features:
Annotation Proteins:
- Refseq: NP_195988.1 — Duplicated homeodomain-like superfamily protein
- Swissprot: Q9LZS0 — PTL_ARATH; Trihelix transcription factor PTL
- TrEMBL: A0A178U774 — A0A178U774_ARATH; PTL
- STRING: AT5G03680.1 — (Arabidopsis thaliana)
Gene Ontology:
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0009909 — Biological Process — regulation of flower development
- GO:0010200 — Biological Process — response to chitin
- GO:0046621 — Biological Process — negative regulation of organ growth
- GO:0048442 — Biological Process — sepal development
- GO:0048498 — Biological Process — establishment of petal orientation
- GO:0090428 — Biological Process — perianth development
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0042803 — Molecular Function — protein homodimerization activity
Family Introduction:
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature:
- Systematic analysis of GT factor family of rice reveals a novel subfamily involved in stress responses. DOI: 10.1007/s00438-009-0507-x ; PMID: 20039179
Sequences:
CDS Sequence:
- >AT5G03680.1|Arabidopsis_thaliana|Trihelix|AT5G03680.1
ATGGATCAAGATCAGCATCCTCAGTACGGTATACCGGAGCTCCGGCAGCTCATGAAAGGCGGAGGAAGGACGACTACTACAACACCGTCTACTTCTTCTCATTTTCCCTCTGATTTCTTCGGTTTTAACCTTGCTCCGGTGCAGCCACCGCCACACCGTCTTCATCAGTTCACTACTGATCAAGATATGGGTTTCTTGCCACGTGGCATACATGGATTGGGTGGAGGTTCTTCAACGGCTGGAAATAACAGTAACTTAAACGCGAGTACTAGTGGTGGAGGAGTTGGGTTTAGTGGGTTTCTTGACGGTGGTGGTTTCGGCAGCGGAGTAGGAGGAGACGGTGGAGGAACTGGAAGGTGGCCGAGACAAGAAACCCTAACTCTGTTGGAAATTAGATCTCGTCTTGATCATAAATTCAAAGAAGCTAATCAAAAAGGACCTCTTTGGGATGAAGTTTCTAGGATTATGTCCGAGGAACATGGATACCAAAGGAGTGGGAAGAAATGCAGAGAGAAGTTTGAGAATCTGTACAAATACTATAGGAAGACTAAAGAAGGCAAAGCCGGAAGACAAGACGGAAAACATTACAGATTTTTCCGGCAGCTCGAAGCGCTATACGGGGATTCTAATAACTTGGTTTCTTGTCCCAATCATAACACGCAGTTCATGAGCAGTGCTCTTCATGGTTTCCATACTCAAAACCCTATGAACGTTACTACAACAACGTCCAACATCCATAACGTTGATAGTGTTCATGGTTTTCATCAAAGCCTTAGTCTTTCTAACAACTACAACTCCTCCGAGCTTGAGCTGATGACTTCCTCTTCGGAAGGGAATGATTCTAGTAGTAGAAGGAAAAAGAGGAGTTGGAAAGCGAAGATAAAGGAGTTCATTGATACGAACATGAAAAGGTTGATAGAGAGGCAAGATGTTTGGCTTGAGAAGTTGACAAAGGTTATTGAAGACAAAGAGGAACAACGGATGATGAAAGAAGAGGAATGGAGGAAGATTGAAGCTGCAAGGATTGATAAAGAGCATTTGTTTTGGGCTAAAGAGAGGGCGAGGATGGAAGCTAGGGATGTTGCGGTGATTGAGGCATTGCAATACTTGACAGGAAAGCCATTGATAAAGCCGCTGTGTTCATCCCCGGAAGAGAGGACAAATGGTAATAATGAGATCCGAAACAATAGTGAGACACAGAATGAGAATGGAAGCGATCAAACGATGACTAACAATGTTTGTGTTAAAGGAAGTAGTAGCTGCTGGGGTGAGCAAGAGATTTTAAAGCTTATGGAGATAAGAACGAGCATGGACTCGACCTTTCAAGAGATATTAGGAGGGTGCTCGGATGAGTTTCTATGGGAGGAAATCGCAGCGAAGTTGATTCAGTTAGGGTTTGATCAGAGAAGTGCCTTATTATGCAAGGAAAAGTGGGAATGGATAAGCAATGGAATGAGGAAAGAAAAGAAGCAAATCAACAAGAAAAGAAAGGATAATTCGTCCAGCTGCGGCGTGTACTACCCGAGAAACGAAGAAAATCCAATCTACAATAATCGAGAAAGTGGATATAATGATAATGATCCGCATCAAATCAACGAACAAGGCAATGTAGGTTCTTCAACATCAAACGCAAACGCAAACGCAAACGTAACCACTGGAAATCCGAGCGGTGCAATGGCTGCTAGTACAAACTGCTTCCCGTTCTTCATGGGAGATGGAGATCAGAATTTGTGGGAGAGTTATGGTTTGAGGCTCAGTAAAGAAGAGAATCAGTAA
Protein Sequence:
- >AT5G03680.1|Arabidopsis_thaliana|Trihelix|AT5G03680.1
MDQDQHPQYGIPELRQLMKGGGRTTTTTPSTSSHFPSDFFGFNLAPVQPPPHRLHQFTTDQDMGFLPRGIHGLGGGSSTAGNNSNLNASTSGGGVGFSGFLDGGGFGSGVGGDGGGTGRWPRQETLTLLEIRSRLDHKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYRKTKEGKAGRQDGKHYRFFRQLEALYGDSNNLVSCPNHNTQFMSSALHGFHTQNPMNVTTTTSNIHNVDSVHGFHQSLSLSNNYNSSELELMTSSSEGNDSSSRRKKRSWKAKIKEFIDTNMKRLIERQDVWLEKLTKVIEDKEEQRMMKEEEWRKIEAARIDKEHLFWAKERARMEARDVAVIEALQYLTGKPLIKPLCSSPEERTNGNNEIRNNSETQNENGSDQTMTNNVCVKGSSSCWGEQEILKLMEIRTSMDSTFQEILGGCSDEFLWEEIAAKLIQLGFDQRSALLCKEKWEWISNGMRKEKKQINKKRKDNSSSCGVYYPRNEENPIYNNRESGYNDNDPHQINEQGNVGSSTSNANANANVTTGNPSGAMAASTNCFPFFMGDGDQNLWESYGLRLSKEENQ