Information report for AHYPO_022698-RA
Gene Details
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Functional Annotation
- Refseq: XP_019106499.1 — PREDICTED: uncharacterized protein LOC104899764 isoform X2
- TrEMBL: A0A0J8BFY7 — A0A0J8BFY7_BETVU; Uncharacterized protein
- STRING: XP_010693644.1 — (Beta vulgaris)
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Beta vulgaris: Bv3_067330_geyj.t1, Bv7_170120_ospm.t1
- Capsicum annuum: CA03g16650
- Citrullus lanatus: Cla006226
- Cucumis melo: MELO3C006856P1
- Gossypium arboreum: Cotton_A_01361_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D12G2657, Gh_A12G2376, Gh_D07G0404, Gh_A07G2287
- Manihot esculenta: Manes.06G140900.1.p
- Populus trichocarpa: Potri.012G132300.1
- Ricinus communis: 30147.m014143
- Vitis vinifera: GSVIVT01018456001
Sequences
CDS Sequence:
- >AHYPO_022698-RA|Amaranthus_hypochondriacus|Trihelix|AHYPO_022698-RA
ATGAGTGAGACTAAAGATGAGAGAGAAACATCATCACCATCAAAAGATCATGATAGAGAAACAATCACAACCCAGAAATTTAGAGGAACACCACCAGCTCCTCTGTTTCTTCCTCCCTTTGACTACGAACAAGTTAATAGTAGTAGTAACATTAAAAGACCAAGATTTGCAACTTCTACGATTCATCATCAATGGAAACAACAAAGCCCAATGGGCTTAAAAAACCCAGAATCAAGCCCATCTCCATCAAACCCACAAACCCAATTAACCTCTCCTGATTCATCTTCTTCACCTTCACTTTCGCCTATACCATCTTCATCGACAGGGCAAGAAAACAAGCAAGAACAACAACAGTTTAGAAAAGGGAAGTATGTAAGCCCAGTTTGGAAACCCCATGAAATGCTTTGGCTTGCAAAGGCATGGAGAGCTCAATATCAAGGAGACGGATCTGGGTCTGGGTCTGGGTCTGGTTCGAGTTTAGGTTTGGAAAGTGGAGGAGGAAGAGGAAAGACAAGAGCAGAGAAAGATAGAGAAGTAGCAGAATACTTGAACAAAAATGGAGTAAATAGGGATGCTAAAACAGCAGGGACAAAGTGGGACAATATGTTGGGAGAATTTAGGAAAGTATATGAATGGGAAAGAGAAAGAGCAAGGCAACTACAATCATACATGCATAATACTAATAATCCAAGAAATCCCTTAGTTGGGTTTGAGCCACATTCATCACTACCATTGTCTAACACAAGTGGGTCCCCAAGAATGGAGCTAAGAAGGATAGGAAGAATGAGGATGGCATGGGAAGAATGGGTGAGTTTATGGGCAGAAGAAGGTGAATACCATAGAGGAAGAGTAAAAGTACAAGGTTCTAATCTATTGAATGCTGATGAACTGATTTACTTTGATGAATCAATGGTTGCTTCTTCTTTGGAAGCCTATGAAGATGGCCCACTTAAGGGTTTTTCTGTTGAGAGGTTTGTCCCTGATTTTTCTGAGAGAATACCATTTGCAATTGCCACAGATCAACCTTCTATAAGATCATGGGATTTCCAAGACCCAACAGAATATTACTTAGGATGTCTAAGAGCACCCCCAAAAACACTTCCAACCCTTTTTGAGCTCTCTTGGTACCTACAAGAACCACCACCAGAAGAGTTCCGGCTTCCCCTTCGGAAGGACATATACCGCGATTTACCCCAAGGAAGAGAGCTCTTTTTCACCACATCTGCCAATGAACCTCTAGACAGTAAATCCTTCACCATTGACATCTTAAGCTCACTCATTCGAACCTTCCCAAGCATCACAGCTTCAACCTCTTCAACAAGGGACTCCTACATTGCCCTTTGGGATGATTGTATCAACCGTGTCATTGCAAAATTCTGCCCTTTTGAGATGGTTTTTACTAGAAAAACACCCTACATGTCCTCCGTTTCGAAATCCTTTCGAGATCAATGGCCGAATCTAACAGGAATGGTGAAGAATTTTTGCTTATGGAGAGGTGAAGAAACCGACCAGCTAAGGGAATCTCAACCTTATATTGATCCTTCTTCCTCTATAACACAAAAAATTTCATGGACTTACAAAGGTATTCCTTATATTTTAGGGTACTATGCAATTGGACATAATGTTACATTTTGTGCTTTAAGTCCACCTTCCCCTTCACCATCTTCATCATCATCATCTCAAGATCATACCCAAATTACTAGAACTGATCTTTACTCATTAGATTTATCAAACCCTTCTGAAAGAGTAAAATTACTGATCCCATGTTGGAAAATAGGGATCATATTAGCCTCATTAGCCGAGAAATGCATTAAAAACAATTGTCAAAGTGATTATGAACGTCAAGATCTTGGAGAAGGAAATATCATTGAAATGACAACAAACATGACAACAAGATATTACCCTAATACAAGAAGATGGCAAACAACAAAAGAAATCTACACGGTTTTAGATCAAAGAGTAATTCCTAATGTAGAACATATGATCAGCTATGAAGAAGAAGAATTAGCATTGGTGTTTAAACCTAGAGGTGTAAAATCAAAACCAAAGAATATGGAGCACTTAGTTTTAGCCCTAAAACAAGTAGCTAAAGTATTAGTAGCATTACATGATTTAAGTTTCATGCATAGAGACTTGTCATGGGAAAAGGTGTTGATGATTAATAAGGCGGCCTCTTGTTCCTCCTCAGCCACAGTCTCAGCTATGGCTGAGGAGGTAGAGGAAGGGTGGTTTGTGGCGGGTTTTGAGGAGGCGGTAGGTGCACCGCAAATAAACCCGTTGGTTGAGGTGGGAAGTGGGGAGGAGAGAGAAAAGTATGCACCAGAAATGAGTAGAGGAGTGCATGGAGTGAAAGTAGATGTGTATGGAATAGGGTATTTGATAAAGACAAGTGAAGTAAAATATGAAGGAAGAGTAGGAAAACAGTTAAAAGAGTTAGAAGGGAAATGTATGGATCAAAATCCAGAACAACGCCCAACAGCAGCTGACTGTTACCATCATTTGTTGCAGATTCAGTCGTCACTATCATCCGCCGCCTCTAGCCGCTGCTGCTAA
Protein Sequence:
- >AHYPO_022698-RA|Amaranthus_hypochondriacus|Trihelix|AHYPO_022698-RA
MSETKDERETSSPSKDHDRETITTQKFRGTPPAPLFLPPFDYEQVNSSSNIKRPRFATSTIHHQWKQQSPMGLKNPESSPSPSNPQTQLTSPDSSSSPSLSPIPSSSTGQENKQEQQQFRKGKYVSPVWKPHEMLWLAKAWRAQYQGDGSGSGSGSGSSLGLESGGGRGKTRAEKDREVAEYLNKNGVNRDAKTAGTKWDNMLGEFRKVYEWERERARQLQSYMHNTNNPRNPLVGFEPHSSLPLSNTSGSPRMELRRIGRMRMAWEEWVSLWAEEGEYHRGRVKVQGSNLLNADELIYFDESMVASSLEAYEDGPLKGFSVERFVPDFSERIPFAIATDQPSIRSWDFQDPTEYYLGCLRAPPKTLPTLFELSWYLQEPPPEEFRLPLRKDIYRDLPQGRELFFTTSANEPLDSKSFTIDILSSLIRTFPSITASTSSTRDSYIALWDDCINRVIAKFCPFEMVFTRKTPYMSSVSKSFRDQWPNLTGMVKNFCLWRGEETDQLRESQPYIDPSSSITQKISWTYKGIPYILGYYAIGHNVTFCALSPPSPSPSSSSSSQDHTQITRTDLYSLDLSNPSERVKLLIPCWKIGIILASLAEKCIKNNCQSDYERQDLGEGNIIEMTTNMTTRYYPNTRRWQTTKEIYTVLDQRVIPNVEHMISYEEEELALVFKPRGVKSKPKNMEHLVLALKQVAKVLVALHDLSFMHRDLSWEKVLMINKAASCSSSATVSAMAEEVEEGWFVAGFEEAVGAPQINPLVEVGSGEEREKYAPEMSRGVHGVKVDVYGIGYLIKTSEVKYEGRVGKQLKELEGKCMDQNPEQRPTAADCYHHLLQIQSSLSSAASSRCC*