Information report for AHYPO_003237-RA
Gene Details
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Functional Annotation
- Refseq: XP_010675079.1 — PREDICTED: trihelix transcription factor GTL2
- TrEMBL: A0A0K9QL43 — A0A0K9QL43_SPIOL; Uncharacterized protein
- STRING: XP_010675079.1 — (Beta vulgaris)
- GO:0045893 — Biological Process — positive regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0001158 — Molecular Function — enhancer sequence-specific DNA binding
- GO:0005516 — Molecular Function — calmodulin binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Beta vulgaris: Bv4_083670_hjqh.t1
- Gossypium arboreum: Cotton_A_14977_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A11G2296
- Juglans regia: WALNUT_00017100-RA
- Malus domestica: MDP0000209313
- Manihot esculenta: Manes.09G154300.1.p, Manes.08G132700.1.p
- Medicago truncatula: Medtr1g081180.1
- Populus trichocarpa: Potri.013G039100.2, Potri.013G039100.1, Potri.005G051700.1
- Prunus mume: XP_008218241.1
- Prunus persica: Prupe.6G341000.1.p
- Ricinus communis: 30128.m008610
- Sesamum indicum: XP_011078730.1
Sequences
CDS Sequence:
- >AHYPO_003237-RA|Amaranthus_hypochondriacus|Trihelix|AHYPO_003237-RA
ATGTTTGATGGAATGGGTGACCAATTCTATCAATTCTTAGCTTCTACAACTACAAATTCAAATACTAATAATAGTACTAATAATGCTAATAATTCTTCTACTTCTTCTCTTAATCTTCCTTTATCTTTTTCTCTTCATCATCATCATCACCATGCTTCTTTCCCTTCTTACCCACCAACCTTTGATTCTTCTTACCATCTTCTTCATCATCCTTCACAATTTCTTCATAGAAATGAAGTTAAAGGAGAAATTCTTAACTTACATGATTCTTGTTTGAATCCAAGATCATTGTTGTTGCATGAAATTCCATGGTCTAATGATGAATTGCTTGCTCTCTTTAGACTTAGATCTAGTATGGATAATACTTGGTTTCCTGACTTTATTTGGGAGAATGTTTCTAGCAGAAAGTTAGCAGAGCTTGGGTTCAAAAGGACTGCTGAGAAGTGCAAGGAGAAATTTGAGGAAGAATTCAACAACAACATCAATATTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAGGCTCTTTGGGGAGCTTGAACAACTTTGTAATAATAATAATAATAATAATAATAATAATAATAATAATACAAATATTAATCATGATGATCATCTTCCTGATGATCATCATGATCATCCACAGACTTCATTATCTCAAAGGGGTGAATTTCCGGATGAAGATGAAGATGAAAATAATGTTCATGATGATCATGATTGGGATGATGAAGAAAATGAAGAAAAAAGAAAAAAAGAGAAATTATTAGAAGATAATAATGAAGAAAAAGAAGTGGGTAATACAAGAAAAGTTGAAAATATGAACCACCATGTTGAAGATGAACAATCTATGAATGATGATAGTGAGAAGACTGAGGAAAATACAAAGAAAATGATGAGGAAAAGAAAAAGAACACAAAAGAAATTTGAAATGTTAAAGGGGTTTTGTGAGAAAATTGTTAATAAAATGATGGATCAACAAGAACAACTTCATTGGAAGATTCTAGAAGATATGGTAAAAAGAGATGAAGAAAAGATTGCAAAGGAAGAAGCATGGAAACAACAAGAGATTGAGAGGTTACAAAAGGAATTGGAAATTAGGGCACATGAACAAGCAATTGTTGGTGATAGGCAAGCTAAGATTCTTGATTGTTTAAACAAGTTTAATGCATCATCATCAAATATTATGGAAAATAGTTGGTGTTTTAAAGAGACAATTGAAAATATTAGCAAGGTATCAAATGTTATTACTTTGTCTAATTCCTTAATTTTAAGTACTAATTATCAAGATAATCCCATTAGGGTACAATTACCTCCTTCATCTTCTTGTATAACCCATGATAAAACTTCTTCATTAAATGATAGATTACCCATTAGTGATCAAGTGGTGGGTCAAAACCCTAATAATCCTCCTTCTTTGGTTGATTCTTATAAATTATCGAGTTTAGATCATACCAGCAGTAATGCAACGGATGTTACTGATCGGCAAAAAGTTATTGGAGTAAAAGATGATACCGGGCGAAGATGGCCTAGAGATGAAGTGTTAGCATTGATCAACATAAGGTGTAGTCTCTTTAACAATGGTGGTGATGTGAACAATGATAAAGAAAGTTGTTCTAAGGGTCCCTTATGGGAAAGAATCTCACAAAAGATGATGGAATTAGGGTACAATAGGAATGCAAAAAGGTGCAAAGAGAAATGGGAGAATATAAACAAGTACTTTAGGAAAACAAAGGATTTGAACAAGAAAAGGTCAATTGACTCAAGAACTTGTCCTTACTTTCATCAACTAAGTCATCTTTATAGTCAAGGAACACTAGTGGGCTCCACTGATAGGCAGGTGAGCCTCGCCGGGTCGCCGGAAAATGGTAAGTCCAATGCATTTTCAGGTGGGTGA
Protein Sequence:
- >AHYPO_003237-RA|Amaranthus_hypochondriacus|Trihelix|AHYPO_003237-RA
MFDGMGDQFYQFLASTTTNSNTNNSTNNANNSSTSSLNLPLSFSLHHHHHHASFPSYPPTFDSSYHLLHHPSQFLHRNEVKGEILNLHDSCLNPRSLLLHEIPWSNDELLALFRLRSSMDNTWFPDFIWENVSSRKLAELGFKRTAEKCKEKFEEEFNNNININNNNNNNNNNNNNNRLFGELEQLCNNNNNNNNNNNNNTNINHDDHLPDDHHDHPQTSLSQRGEFPDEDEDENNVHDDHDWDDEENEEKRKKEKLLEDNNEEKEVGNTRKVENMNHHVEDEQSMNDDSEKTEENTKKMMRKRKRTQKKFEMLKGFCEKIVNKMMDQQEQLHWKILEDMVKRDEEKIAKEEAWKQQEIERLQKELEIRAHEQAIVGDRQAKILDCLNKFNASSSNIMENSWCFKETIENISKVSNVITLSNSLILSTNYQDNPIRVQLPPSSSCITHDKTSSLNDRLPISDQVVGQNPNNPPSLVDSYKLSSLDHTSSNATDVTDRQKVIGVKDDTGRRWPRDEVLALINIRCSLFNNGGDVNNDKESCSKGPLWERISQKMMELGYNRNAKRCKEKWENINKYFRKTKDLNKKRSIDSRTCPYFHQLSHLYSQGTLVGSTDRQVSLAGSPENGKSNAFSGG*