Information report for Achn114091
Gene Details
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Functional Annotation
- Refseq: XP_028058465.1 — ribonuclease J-like isoform X2
- Swissprot: Q84W56 — RNJ_ARATH; Ribonuclease J
- TrEMBL: A5C3R9 — A5C3R9_VITVI; Uncharacterized protein
- STRING: XP_002511207.1 — (Ricinus communis)
- GO:0006414 — Biological Process — translational elongation
- GO:0005853 — Cellular Component — eukaryotic translation elongation factor 1 complex
- GO:0003677 — Molecular Function — DNA binding
- GO:0003746 — Molecular Function — translation elongation factor activity
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Beta vulgaris: Bv5_110480_qpat.t1
- Cucumis melo: MELO3C026230P1
- Fragaria vesca: mrna06360.1-v1.0-hybrid
- Juglans regia: WALNUT_00005131-RA
- Manihot esculenta: Manes.14G052700.1.p, Manes.14G052700.2.p
- Petunia inflata: Peinf101Scf02008g02036.1
- Populus trichocarpa: Potri.012G095800.1, Potri.015G093600.1, Potri.015G093600.2
- Prunus mume: XP_016651115.1
- Prunus persica: Prupe.5G152800.1.p
- Ricinus communis: 30147.m014528
- Salvia miltiorrhiza: SMil_00013349-RA_Salv
- Solanum lycopersicum: Solyc03g111260.2.1
- Ziziphus jujuba: XP_015881808.1
Sequences
CDS Sequence:
- >Achn114091|Actinidia_chinensis|Trihelix|Achn114091
ATGTCTGCTTTCAGTGCTCTATCAACCTGTCCGTACAGTTTCTCACGTCGACTAAACCCTAAATACTGTTACATTTCGTGCTCGCTCGCACCTCCCTCATCAACAGGTACACATGGACTTAAAATACCCCAGAAAATATCAGGAAGATTGGAAGGGGCTGGGAAAAGTATGGAAGACTCTGTTAAGCGCAAGATGGAACAGTTTTATGAAGGGTCTGATGGTCCACCTCTCCGTGTCCTTCCAATTGGTGGCCTGGGTGAAATTGGGATGAATTGCATGCTTGTGGGGAATTATGATCGTTATATTCTTATTGATGCTGGTATCATGTTCCCGGACTATGACATGCTTGGCGTCCAGAAAATTATACCCGATACTACCTTTATCAGAAAATGGAGTCACAAAATTGAAGCAGTTATCATAACACATGGTCATGAAGACCACATTGGTGCGTTGCCTTGGCTCATTAAGAAGCGTTTGATTGAGTTCGGGATCTTTGTTCCATCTAGGCTTAAAGTATTTAGAACGAGGAGGAGATTCAGTGCTGGTCCATTTGAAATAGAGCCTATCACGGTCACCCATTCTATTCCTGATTGTTGTGGATTAGTTCTCCGATGTGCTGATGGGACTATACTTCATACTGGGGACTGGAAGATTGATGAGTCACCGCTGGATGGGAAAGTTTTTGATCGTGAGGCTCTAGAGGAACTCTCAAAAGAGGGAGTAACATTAATGATGAGTGACTCAACAAATGTGCTCTCACCTGGAAGGACACTTAGTGAAACAGTTGTAGCTGATGCACTGTTGAGACATATTTCAGCTGCTAAAGGAAGGGTTATTACGACTCAGTTTTCATCAAATATACATCGTCTTGGAAGCATTAAAGCAGCAGCTGATTTAACTGGCAGAAAGTTGGTGTTTGTTGGCATGTCCTTGAGGACATACCTAGATGCTGCATGGAAAGATGGAAAGGCACCAATTGATCCATCTACCCTGGTAAAAGTGGAGGATATCGATACGTATGCCCCAAAGGATTTACTAATTGTCACAACTGGCTCTCAAGCAGAACCACGTGCTGCACTGAATCTTGCATCACACGGAAGTAGTCATTTATTGAAATTGAGCAAAGAAGACATAATTCTGTACTCCGCGAAGGTGATCCCTGGTAATGAGACTCGGGTGATGAAAATGTTTAACCGTATTTCAGAGATTGGATCAACAATGATAATGGGAAAGAATGAGAAGCTACACTCATCTGGTCATGGGTACCGCGATGAATTGTTGATGTACAGTGATGGTGATAAAGCATTTGGTACATCCACTGACCTTTACCTCGATGAGAGATGGAAAATTGCTCTAAATGGTATTGTCATGGTCAGCATGGAAATTTTACGCCGTCAAGAGGCTGTTGGTTCAGCTGAGAAAACATTGAAGGGGAAAATAAAAATCACTACGCGTTGCTTGTGGCTTGACGAAGGAAAGCTTTTGGATGCACTCCACAAGGCTGCCCATGCTACACTCTCTAGCTGTCCTGTAAATTGTCCTCTAGCCCACATAGAAAGAACCGTGTCTGAAGTTTTGAGAAAACTGGTTAGAAAATACAGTAATAAAAGGCCTGAAGTCATTGTTATTGCCGTAGAAAATCCAGAAACAGTTCTCTCGGATGAGCTCAATGCAAGGCTATCTGGCGAGCCACGCGGTGGTTTTAGGATATCAGCTTTGAGAAATGTGGCGGATGGTCATCCAAAAAAGAGACGACCAACTAAGATACAAGAGGAAGAAGGACGCAACGGGATTCATTCAATGAGAAACACACAACATGAATTGGAAGATCATAGCGGCGTTGAAGGTGAAAGACTTGTGTCTGAAGAAGCCACTATTTCAGGTTCTGAGTTAGCAGCGAGGTTTTCTCTGAATTCTGAGTCAGCAGAGAGGTTTTCTGTCAATTCCGAGTCAGATGAGTTCTGGAAGTCATCCATAGTATCATCACCAATTGATGAATTGGTTAAAGATAGCACCGGTTCTATTCCACAGGAGGAGGATAGGGAGAAGCTTAAAAAAGAGATTGTGTTTGATGATTCTGTTGAAATTCCAATATCTCGATTACAATCGTCCAAGCCTGTAAAACTGAACAGATGGAATCCTGATGAGGTTATGAAGCTAATTAACTTGCGTGGGCAACTCCATATCAGATTCCAAGTTGCAAAGCAGCAAAAGGTCCTCTGGGAAGAGATATCTTCTAACCTGCTGGCTGATGGAGTTAATCGAAGTCCCAGGCAGTGCAAATCTCAATGGACATATCTGGTTAAGAAATATGAGGGATTTTCTACTCAGCAGGAAAGCAAAAGTGACGAGAAAGGGTTAGTAATGGCAGTCACGTGCTTCGATGTCAACTCGCAATCTGGCCTCAAGAAGCTCTATGAGTACCTCCTAACACGGAGTTACATCACCGGGTACCAAGCCTCAAAGGATGATATCACTGTGCACGCTGCTCTTTCAAAGCCTCCATCCTCTGAATATGTGAATGTGTCTCGGTGGTATAACCACATTGAAGCACTTCTGAGGATTTCTGGTGTTTCTGGGGAAGGTTGCGGTGTCACAGTAGAGGGATCTGCTACGGCTGATGCTGTAGCAACTCCTCCTCCTGCTGATTCAAAGGCAAGCTCTTATGCTTCAGCTGCCGATGATGACGATGATGATGATGTGGATCTGTTTGGTGAAGAGACTGAAGAGGAAAAGAAGGCTGCTGAAGAACGTGCAGCTGCTGTGAAAGCATCTGGGAAAAAGAAAGAATATCATTTTGTTCTATACCTCTTCCTGTTTTTAACAAGTGACAAGATTTTCTTGATTTTAATGACAGCTGGAAAGTCGTCAGTTCTCTTGGATGTGAAGCCATGGGACGATGAGACTGACATGAAAAAGCTTGAGGAGGCTGTAAGAAGTGTCCAGATGGAAGGATTGTTTTGGGGAGCTTCCAAACTTGTGCCCGTTGGTTATGGTATTAAGAAACTGCAGATTATGCTTACCATTGTGGACGACTTAGTGTCCGTTGACGACATGATTGAGGATTACCTCACGGCAGAACCAGTGAATGAATATGTCCAGAGTTGCGATATTGTTGCCTTCAACAAAATATCTATTCTTGCCTATTGTATACTCTATGTATCTTTATCATCATTCTTATTGTTAAATGATTCTTGTGACAGAATTTCAACAATCCGATTGGCTTCTTCGGGTTGCAGGAGGTGTTTTGCTGCTAAATTATCCTATTTTGCTGTCTTTATTTTTCCATGCATTGATCAGTGCCATCTGAATTTTTGTATAAATGCGGATGAGTTTAAAAATGGTTATGCTGTTGCAATGACCGTGTTGTTCTTCATTTGCATCTGTAACGATGACCACAAAAGTGGAAAAATACTACAATCCTCAATGAATGAGAAAAATTGGAGAAACAAGAGAACCGCAATGAAGGAACTGCTTGCATAA
Protein Sequence:
- >Achn114091|Actinidia_chinensis|Trihelix|Achn114091
MSAFSALSTCPYSFSRRLNPKYCYISCSLAPPSSTGTHGLKIPQKISGRLEGAGKSMEDSVKRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGIMFPDYDMLGVQKIIPDTTFIRKWSHKIEAVIITHGHEDHIGALPWLIKKRLIEFGIFVPSRLKVFRTRRRFSAGPFEIEPITVTHSIPDCCGLVLRCADGTILHTGDWKIDESPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTLSETVVADALLRHISAAKGRVITTQFSSNIHRLGSIKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDTYAPKDLLIVTTGSQAEPRAALNLASHGSSHLLKLSKEDIILYSAKVIPGNETRVMKMFNRISEIGSTMIMGKNEKLHSSGHGYRDELLMYSDGDKAFGTSTDLYLDERWKIALNGIVMVSMEILRRQEAVGSAEKTLKGKIKITTRCLWLDEGKLLDALHKAAHATLSSCPVNCPLAHIERTVSEVLRKLVRKYSNKRPEVIVIAVENPETVLSDELNARLSGEPRGGFRISALRNVADGHPKKRRPTKIQEEEGRNGIHSMRNTQHELEDHSGVEGERLVSEEATISGSELAARFSLNSESAERFSVNSESDEFWKSSIVSSPIDELVKDSTGSIPQEEDREKLKKEIVFDDSVEIPISRLQSSKPVKLNRWNPDEVMKLINLRGQLHIRFQVAKQQKVLWEEISSNLLADGVNRSPRQCKSQWTYLVKKYEGFSTQQESKSDEKGLVMAVTCFDVNSQSGLKKLYEYLLTRSYITGYQASKDDITVHAALSKPPSSEYVNVSRWYNHIEALLRISGVSGEGCGVTVEGSATADAVATPPPADSKASSYASAADDDDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKEYHFVLYLFLFLTSDKIFLILMTAGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLFWGASKLVPVGYGIKKLQIMLTIVDDLVSVDDMIEDYLTAEPVNEYVQSCDIVAFNKISILAYCILYVSLSSFLLLNDSCDRISTIRLASSGCRRCFAAKLSYFAVFIFPCIDQCHLNFCINADEFKNGYAVAMTVLFFICICNDDHKSGKILQSSMNEKNWRNKRTAMKELLA*