Information report for Achn089301
Gene Details
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Functional Annotation
- Refseq: XP_028055162.1 — trihelix transcription factor GT-4-like
- TrEMBL: A0A2R6P976 — A0A2R6P976_ACTCH; Trihelix transcription factor GT-1 like
- STRING: XP_010248872.1 — (Nelumbo nucifera)
- GO:0003677 — Molecular Function — DNA binding
- GO:0005524 — Molecular Function — ATP binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Glycine max: Glyma.11G247300.1.p, Glyma.18G010000.1.p
- Lactuca sativa: Lsa018757
- Malus domestica: MDP0000164819, MDP0000259111
- Manihot esculenta: Manes.13G014800.1.p
- Populus trichocarpa: Potri.010G055000.1
- Prunus mume: XP_008222027.1, XP_008222025.1
- Prunus persica: Prupe.1G235200.1.p
- Ziziphus jujuba: XP_015894426.1, XP_015894425.1
Sequences
CDS Sequence:
- >Achn089301|Actinidia_chinensis|Trihelix|Achn089301
ATGGGGACCTGGAATTCCATTCCATTCTGGCCTCTCATAAGGTGGTACTTAGTCGCGATTGTAGAACGTATGACCACTGTGAAGCATAAAATTCTTGTTTTATCCGGGAAAGGTGGAGTTGGGAAGAGCACATTCTCTGCTCAACTTGCATTTGCCCTAGCTGCAATGGATTTTCAGGTGGGTCTCCTTGACATTGATATTTGCGGCCCGAGCATCCCAAAGATGCTTGGTCTAGAGGGCCAGGAAATCCACCAGAGCAACCTCGGATGGTCTCCTGTCTATGTCGAGTCCAACCTTGGAGTCATGTCAATTGGCTTCATGCTGCCCCACCCAGACGAGGCTGTCATATGGAGGGGGCCACGCAAGAACGGGATCATCAAGCAATTTCTGAAGGATGTTTACTGGGGAGAGCTTGATTTTCTCGTAGTTGATGCCCCACCCGGAACCTCAGATGAGCACATCTCAATCGTCCAATTTCTCCAAGCAACCGGGATCGATGGTGCGATCATTGTCACGACCCCACAACAGGTTTCTTTAATCGACGTGAGGAAAGAAGTGAGTTTCTGCAAGAAGGTTGGACTACAAGTGCTTGGTGTCGTCGAGAACATGAGTGGCTTGTGCCAACCGGTGTCTGATTTGAAATTCTTGAGGTCGACTGAGTCCGGAGAACAAACAGATGTTACTGAATGGGTGATGAAGTATATGAGAGAGAGGGCACCGGAAATGCTAGATGTGGTTGCTTATAGTGAAGTTTTTGACAGTAGCAGTGGTGGTGCTGCAAAAATGTGCAGCGATATGGGTGTTCCTTTCCTTGGAAGGGTGCCTTTGGATCCTCGGCTATGCAAGGCAGCTGAAGAAGGTCGATCCTGCTTCGATGACAATAAATGTGGGTTGAGCGCTGCTGCGCTTAAAAGGATTATTGATAAACTGGTGGCTGATGGAATGGTTTCAAGTACAGACTGTGATTCGAGGCTAGGGTTTGTGGTGTTGGAGCTGCGCATCAGTAATCGAAACATGTATCTGGAGAAGCCTCGTCCGATCGATTTCTACAAGGGAGAAGAGAGCGACATGGCGATCGAAATCTCCTCCAATGGCGACCTGCCACATTACCCCCACCAGCAGCAGCAACCGCCGCACCAGATGATTCCCGGCGACAGCAGCGGCGGCGAGGACCACGAAGCGAAGGCTCCGAAGAAGAGAGCGGAGACTTGGGCTCAGGAGGAGACTCGGTCTCTGATCGGTCTCCGCCGCGAAGTGGACGCTCTCTTCAACACCTCCAAGTCGAACAAGCACCTGTGGGATCAGATCTCGTCCAAGATGAGAGAGAAGGGGTTCGATCGATCGGCGACGATGTGTACGGACAAGTGGAGGAACCTGTTGAAGGAGTTCAAGAAGGCGAAGCTTCAAGATAGGAGCAGTGCTTTGGCTAAAATGTTGTATTACAAGGAGCTCGAAGACTTGCTCAGAGATAGGGGCAAGAATGGCCCCTACAAGAGTCCCAGTTCTTCCAAAGTCGATTCGTATATTCAGTTTTCGGATAAAGGTCTTGAGGATGGCAATATCCCATTTGGATCAGTGGAAGCTAATGGCCAGTCAACAGTCAACCTTGAAAGACCATTGGATCATGATGGTGACCCTCTTGCCATCACTGCAGCTGATGCAGTTGGAGCTAATGGAGTACCCCCTTGGAACTGGAGAGAAAACCCTGGAACTGGTGGCGAGGGCCATTCTGCTTATGGTGGGAGGGTCATAACAGTCAAGTGGGGGGAATACACTAGAAGGATCGGTATTGATGGAACTGCTAATGCAATCAAGGAGGCAATCAAATCTGCTTTTCACTTGCGAACTAGACGGGCATTTTGTTTGGAGGATGAGGATAATGTCATTCGGAGTCTCGACAGGGACATGCCTTTGGGCAATTACACTCTTCACCTTGATGAAGGAATCTCAATAAAAGTATGCCTCTACGATGAGGCTGACCATATGGCAGTCCGCGCTGAAGACAAAACTCTTTATACTGAAGACGAATTCCGGGATTTTCTCACACGTAATGGCTTTATGGGCTTGAGAGAGATAAATGGCTATAGAACGTTTGATAACTTGGATGATCTCCGGCCTGGTGCAGTGTATCAGGGAGTGAGACTTCTGGGCGAGTAA
Protein Sequence:
- >Achn089301|Actinidia_chinensis|Trihelix|Achn089301
MGTWNSIPFWPLIRWYLVAIVERMTTVKHKILVLSGKGGVGKSTFSAQLAFALAAMDFQVGLLDIDICGPSIPKMLGLEGQEIHQSNLGWSPVYVESNLGVMSIGFMLPHPDEAVIWRGPRKNGIIKQFLKDVYWGELDFLVVDAPPGTSDEHISIVQFLQATGIDGAIIVTTPQQVSLIDVRKEVSFCKKVGLQVLGVVENMSGLCQPVSDLKFLRSTESGEQTDVTEWVMKYMRERAPEMLDVVAYSEVFDSSSGGAAKMCSDMGVPFLGRVPLDPRLCKAAEEGRSCFDDNKCGLSAAALKRIIDKLVADGMVSSTDCDSRLGFVVLELRISNRNMYLEKPRPIDFYKGEESDMAIEISSNGDLPHYPHQQQQPPHQMIPGDSSGGEDHEAKAPKKRAETWAQEETRSLIGLRREVDALFNTSKSNKHLWDQISSKMREKGFDRSATMCTDKWRNLLKEFKKAKLQDRSSALAKMLYYKELEDLLRDRGKNGPYKSPSSSKVDSYIQFSDKGLEDGNIPFGSVEANGQSTVNLERPLDHDGDPLAITAADAVGANGVPPWNWRENPGTGGEGHSAYGGRVITVKWGEYTRRIGIDGTANAIKEAIKSAFHLRTRRAFCLEDEDNVIRSLDRDMPLGNYTLHLDEGISIKVCLYDEADHMAVRAEDKTLYTEDEFRDFLTRNGFMGLREINGYRTFDNLDDLRPGAVYQGVRLLGE*