Information report for 487148
Gene Details
Functional Annotation
- Refseq: XP_002871053.1 — trihelix transcription factor PTL isoform X1
- Swissprot: Q9LZS0 — PTL_ARATH; Trihelix transcription factor PTL
- TrEMBL: D7LWS7 — D7LWS7_ARALL; Uncharacterized protein
- STRING: fgenesh2_kg.6__282__AT5G03680.1 — (Arabidopsis lyrata)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0009909 — Biological Process — regulation of flower development
- GO:0010200 — Biological Process — response to chitin
- GO:0046621 — Biological Process — negative regulation of organ growth
- GO:0048442 — Biological Process — sepal development
- GO:0048498 — Biological Process — establishment of petal orientation
- GO:0090428 — Biological Process — perianth development
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
- GO:0042803 — Molecular Function — protein homodimerization activity
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Arabidopsis thaliana: AT5G03680.1
- Brassica napus: GSBRNA2T00080047001, GSBRNA2T00136444001, GSBRNA2T00032265001
- Brassica oleracea: XP_013618687.1, XP_013607315.1, XP_013626624.1, XP_013618688.1
- Brassica rapa: XP_009125515.1, XP_009130776.1, XP_009122682.1, XP_009125516.1
Sequences
CDS Sequence:
- >487148|Arabidopsis_lyrata|Trihelix|487148
ATGGATCAAGATCAGCATCCTCAGTACGGTATACCGGAGCTCCGGCAGCTCATGAAAGGCGGAGGAAGGACGACCACGACAACACCGTCTACTTCTTCTCATTTTCCCTCTGATTTTTTCGGTTTTAACCTCGCTCCTGTGCAGCCACCGCCGCACCGTCTTCATCAGTTCACTACTGATCCAGATATGGGTTTCTTGCCACGTGGCATACATGGATTGGGTGGAGGAGGTTCTTCGACGGCTGGAAATAACAGTAACTTGAACGCGAGTACTAGTGGTGGAGGAGGTGTTGGGTTTAGTGGGTTTCTTGACGGTGGTGGTTTCGGCGGCGGAGGTGGAGGAGAGGGCGGAGGAACTGGAAGGTGGCCGAGACAAGAAACCCTAACTCTGTTGGAAATTAGATCTCGTCTTGATCATAAATTCAAAGAAGCTAATCAGAAAGGACCTCTCTGGGATGAAGTTTCTAGGATTATGTCCGAGGAACATGGATACCAAAGGAGTGGGAAGAAATGCAGAGAGAAGTTTGAGAATCTTTACAAATACTATAGGAAGACTAAAGAAGGCAAAGCCGGAAGACAAGACGGAAAACATTACAGATTTTTCAGGCAGCTCGAAGCACTCTACGGCGATTCCAATACCTTGGTTTCTTGTCCTAATCATAACACGCAGTTCATGAGCAGTGCTCTTCATGGTTTCCATACTCAAAACCCTATGAATGTTACTACAACAACGTCCAACATCCATAACGTCGATAGTGTTCATGGTTTTCATCAGAGCCTTAGTCTTTCTAACAACTACAACTCCTCCGAGCTTGAGCTGATGACTTCCTCTTCGGAAGGGAATGATTCTAGTAGTAGAAGGAAAAAGAGGAGTTGGAAAGCGAAGATCAAGGAGTTCATTGATACAAACATGAAAAGGTTGATAGAGAGGCAAGATGTTTGGCTTGAGAAGTTGACAAAGGTTATTGAAGACAAAGAGGAGCAACGGATGATGAAAGAAGAGGAATGGAGGAAGATTGAAGCTGCACGGATTGATAAAGAGCATTTGTTTTGGGCTAAAGAGAGGGCGAGGATGGAAGCTAGGGATGTCGCGGTGATTGAGGCATTGCAATACTTGACAGGAAAGCCATTGATAAAGCCGTTATGTTCGTCGCCAGAAGAGATTAATGGTAATAATGAGATCCGAAACAATAGTGAGAATCAGAATGAGAATGGAAGCGATCAAACAATGACTAACAATGTTTCTGTTAAAGGAAGTAGTAGCTGCTGGGATGAGCAAGAGATTTTGAAGCTTATGGAGATAAGAACGAGCATGGACTCGGCGTTTCAAGAGATATTGGGAGGGTGCTCAGATGAGTTTTTATGGGAGCAAATCGCGTCGAAGTTGATTCAGTTAGGGTTTGATCAGAGAAGTGCCTTATTATGCAAGGAAAAGTGGGAATGGATAAGTAATGGAATGAGGAAAGAAAAGAAGCAAATCAACAAGAAAAGAAAGGATAATTCGTCGAGCTGCGGCGTGTACTATCCGAGAAATGAAGAAAATCCAATCTACAATAATCAAGAAAGTGGATATAATGATAATGATCGGCATCAGATGAACGAACAAGGCAATGTAGGTTCTTCAACATCAAACGCAAACGCAAACGTAACCGCTGGAAATCCGAGCGGCGCAATGGCAGCTAGTACAAACTGCTTCCCGTTCTTCATGGGAGATGGAGATCAGAATTTGTGGGAGAGTTATGGTTTGAGGCTAAGTAAAGGAGAGAATCAGTAA ATGTTAGATCTTAATCTGAATGCGGATTCGACTCAGAATGATGACTCGCCCGTGCTTTTTGAAAAGATTCCAGAAGCTTCTTCTGGAACTTCCAATTCCTCCATCGTGAATGCGGATGCCTCGAGTAGCGGCGCCGGCACCGGCACCGGCGACGAAGAGTCGGGCTCTACACGCGCCGGCGAGGCCTACACCTTCAATTTCGGTATCCTTAAGGTGGAAGATGGAAATGACGTTGTTGCAACGAAGGAGCTGTTTCCGGTGAGTGTGCGAAATTTGCAGGGGCAGTCTTTGGCGATGATGTTTCCGACGAGGAAGAGTGAGATGGATCTTACGCTGGATCATCATGGAGGTGAAAATGGAATTGTTCAGGTTCAACAACGACCTCAGGTGAAGAAAAGTAGGAGAGGACCGAGGTCTCGAAGCTCTCAGTACAGAGGAGTTACGTTCTACAGGAGAACTGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAGCAAGTTTATTTAGGTGGATTTGATACAGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATAAAGTTCAGGGGACTTGATGCTGATATCAATTTCAATCTCGTTGAGTATGAGGAGGATATGAAACAGATGAAGAATCTTTCAAAGGAGGAATTTGTGCACATACTACGTCGCCACAGTAACGGTTTCTCAAGGGGGAGTTCAAAATACAGAGGAGTGACACTTCACAAATGTGGTCGTTGGGAAGCTCGAATGGGACAACTCCTTGGCAAAAAGTATATATATCTTGGACTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAAGCAGCTATCAAGTGCAATGGAAGAGATGCGGTGACTAACTTTGAGCCAAGTACATATGAAAATGAAATGAAAACAGAAAGTATTAATGAAGGTGGCAGTGATAGCCACAATCTTGACCTTAATTTGGGCATAGCGACTCCAAGACATGAACCCAAAGAAAACAGAGCGTATCACCAGTTTCAGGCTGTTCCTCACAACATGCATCTTGGAAGGAGTTCAAAGATGGAGATTAAGGCTAATTCAGTTATTGGTGACCAGTCTTTGAAAAGGATGGTTGTAACTGAAGAGCATCCTTCCACCTGGAATCATGCCACATACTCCAGTTTCTTTTCCAATGAGGGAAGAAGAGCAGAGAGAATCGGCATTGATCCTTCAAAAGGACTCCCCAACTGGGCGTGGCAAGCACATGGCCAGGGACAGGGTAGTACTGCTTCCCCGGTACAACAATTCTCTTCTGCAGCATCATCAGGATTCTCCATTTCAGCTACCTTTCCATCAAGTTCCATATTTCAAACACAACCATTGAACTCAATTCCACACACACTCTGTTTCGCTCCATCCATTGCACCTGGTAGCTATGCATCTCAATACTATTACCAGGTCAAATCCTCACAAGCTCCCTAG
Protein Sequence:
- >487148|Arabidopsis_lyrata|Trihelix|487148
MDQDQHPQYGIPELRQLMKGGGRTTTTTPSTSSHFPSDFFGFNLAPVQPPPHRLHQFTTDPDMGFLPRGIHGLGGGGSSTAGNNSNLNASTSGGGGVGFSGFLDGGGFGGGGGGEGGGTGRWPRQETLTLLEIRSRLDHKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYRKTKEGKAGRQDGKHYRFFRQLEALYGDSNTLVSCPNHNTQFMSSALHGFHTQNPMNVTTTTSNIHNVDSVHGFHQSLSLSNNYNSSELELMTSSSEGNDSSSRRKKRSWKAKIKEFIDTNMKRLIERQDVWLEKLTKVIEDKEEQRMMKEEEWRKIEAARIDKEHLFWAKERARMEARDVAVIEALQYLTGKPLIKPLCSSPEEINGNNEIRNNSENQNENGSDQTMTNNVSVKGSSSCWDEQEILKLMEIRTSMDSAFQEILGGCSDEFLWEQIASKLIQLGFDQRSALLCKEKWEWISNGMRKEKKQINKKRKDNSSSCGVYYPRNEENPIYNNQESGYNDNDRHQMNEQGNVGSSTSNANANVTAGNPSGAMAASTNCFPFFMGDGDQNLWESYGLRLSKGENQ*