Information report for 486315
Gene Details
Functional Annotation
- Refseq: XP_020880580.1 — trihelix transcription factor ASIL2
- TrEMBL: D7LW59 — D7LW59_ARALL; Transcription factor
- STRING: fgenesh2_kg.5__2307__AT3G58630.1 — (Arabidopsis lyrata)
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Arabidopsis thaliana: AT3G58630.1
- Brassica napus: GSBRNA2T00105853001, GSBRNA2T00098943001, GSBRNA2T00155696001
- Brassica oleracea: XP_013588608.1, XP_013600796.1
- Brassica rapa: XP_009104155.1, XP_009116540.1
- Cajanus cajan: C.cajan_28489
- Cicer arietinum: XP_004505493.1, XP_004505494.1
- Glycine max: Glyma.12G210900.1.p
- Ziziphus jujuba: XP_015881243.1
Sequences
CDS Sequence:
- >486315|Arabidopsis_lyrata|Trihelix|486315
ATGATGGACGCCGTCAACGATTCCTTTTCGCCGGGATCTTCTCGTCCTTCGCCGTCGACGCTTTCTCGTGAAGATTGCTGGAGCGAGGAAGCGACCTTCACGCTAATCCAAGCCTGGGGTAATCGCTACGTCGAGCTTAGCCGTGGTAATCTCCGTCAGAAACACTGGCAAGAGGTGGCTAACGCCGTTAACGACCGTCACTACAACACCGGCCGAAACGTTTCCGCCGCCAAATCGCAGCCGTATCGCACCGACGTTCAGTGTAAAAACCGGATCGATACTTTGAAGAAGAAGTTCAAAGTGGAGAAGGCTAGGGTTTCCGAATCCAATCCCGGTGCCTACATCAGCCCTTGGCCTTTCTTCTCCGCTCTCGATGACCTTCTCCGGGAAAGCTTTCCGACGTCTAGTAATCCTGATTCAACTGATAACATCCCGAGCCAGAGGCTATCGCTTCCGATGGCGATTATTCCAGTTCCGGTCGCTCCACGATCGGCGATCCCCAGACGTCCGGCGACGTCGCCGGCGATTATACCTCACGTCGGTGACGATTTACTCGGATTCCGCGGAAATCTAAACGCATTCGCGGCAGCCGCAGCGGCGGCGGCGTGCCCGGCGTCTGAGGATGATTCGGAAGGTTCAAGGTCTAGATCGAGCGGACGAAGCGGAAGTAAGAAGAAGCGGGAGAGGGAAACTGAGAAGAAGCAAGGTTACAAGGAAGTTGCCGACGCAATTGAGAGGCTTGGACAGATATACGAGAGAGTCGAGGAGAGGAAGAGGAAGGAAATGGTTGAATTGGAGAAGCAGAGAATGCGATTCGCTAAGGAATTGGAATGTCATAGGATGCAACTCTTCACTGAGATGCAGGTACGTCTTCATAAGCTCCGGCGTACTTCTGGATCCAAAGGACCGACGTCCTCCGCCTCCGCCGCTCTTGATTATGGGATGATAGACTTTCCTAGTTACTTCTAA ATGGCAGAACCTCATCCTATTATAGACGAAAATTTGCTTCATACAGCCAGTATCCCCATTAGTTTCCCTGATAGGATTGGTTTGAACAATCAAAACCACATTATGGACGGACAAAACCACATCATGGATGGACATGAAATTCCAATTCCTTTTATGTTGCAAGGAGAAGCCATAAACAGTTCTCAAGCTTTTCTAAGTCTACCAAATTTTCCTCGAGCTGTTGACAACGGAGCAATTCACAATGTGCTACCAATGAGAAACAGAACAAAGGAGTTTTTGCTGAGTACTTCATATCCAATCAGTAACTCTTACACAGAGGATCAGTATATGGAGGGAATACCTATTTCTGCTTTATCTCTTGCAAATCTTTTGGCTACAAGGAACGCTATGCCCGAGAATCATGAAAATTTAGCGGCATTGGCTCCCTTATCACATCCTGTGGAAGGCCATAAAACTGATGTTCTAGACTATCCTACGATGTTAAGTCATTCGTTTGGATCCTATAGAAACTATGAGTTTGATAGTGTCCCGGAAATTGCTGGGACCGTTGCAGGACGAACAGGATCCCAACCTTTCCAATTAACTCATGAGAATGTGAATTCAAACACATGGTTCTCATCAGAAACTGCTAGTATGAGTTCCGACAGTCCCTCTGGATCCTCTTCCAGATTTAGCAATGAGCTTTCTTTAAGTCTCACATCAACACAATCTGCTGTTGCTTGTGGGACTACTATCCGGGACCAATGCTCGGATATAAGCTGCTCCGGTGTCACCAACCATGCTTTCCCTCAAAGACGGTTTGATTCAGAGCTAACGTCTTGCAACAGCAGAAATCTGTCTTTAAATTTTGGCTCATATAAACCAGTCCACCTTTCGCAATTCTTAACCGGATCAAGATATCTTCGTGTGATGCAAGAAATACTTTCTGAAATGGCTCATTTATCACTTCAAAATCATAACTTGGTAGGCTACCGAGGAAATGGGACAGAATATGGTGCTAACACTTCTTTTACTTTGAGTTCTGATGATTTGCCTGATGAAGACTGTAGAATCATAGGTCAAATGGATTCCGAAGCAAAGAAAAAACATCTGGTGGCTTTGTTGCAAGTGGTTGATGATCAATACAACCAATGCTTGGATGAGATTCATATGGTTATATCCGCGTTTCATGCTGTGACCGAGTTGGATCCTAGCATACATGCTCGTTTCGCCCTTCAAACTATTTCCTCCTTGTATAAAAACCTGAGGGAGAGAATAAGTAATTACATACTCGCGATGGGAGAACATTTTAATAGAGGAGAAAGGGTAGTAGAGAAATCATTTGAAACATCGTTCATTCAAAAACAGTGGGCACTTCAGCAACTAAAAAGGAAAGATCATCAGTTATGGAGACCACAGAGAGGCTTGCCGGAAAGATCTGTCTCAGTTTTGAGAGCATGGATGTTTCAAAACTTTCTTCACCCATATCCAAAGGATGCAGAGAAGCAATTGCTAGCAGTAAAAAGTGGATTGACAAGGAGCCAGGTATCTAATTGGTTTATAAATGCTCGAGTTCGTCTCTGGAAACCAATGATAGAGGAAATGTATGCTGAGATGAATAGAAGGAAAATTCGTACTGGAAATCATGAAGATGAAACCAACAATCGAAGAAATCACAAAATTATTGACAATCGTTTATTTACTATGAAGTGA
Protein Sequence:
- >486315|Arabidopsis_lyrata|Trihelix|486315
MMDAVNDSFSPGSSRPSPSTLSREDCWSEEATFTLIQAWGNRYVELSRGNLRQKHWQEVANAVNDRHYNTGRNVSAAKSQPYRTDVQCKNRIDTLKKKFKVEKARVSESNPGAYISPWPFFSALDDLLRESFPTSSNPDSTDNIPSQRLSLPMAIIPVPVAPRSAIPRRPATSPAIIPHVGDDLLGFRGNLNAFAAAAAAAACPASEDDSEGSRSRSSGRSGSKKKRERETEKKQGYKEVADAIERLGQIYERVEERKRKEMVELEKQRMRFAKELECHRMQLFTEMQVRLHKLRRTSGSKGPTSSASAALDYGMIDFPSYF*